| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is potA [H]
Identifier: 13471905
GI number: 13471905
Start: 1662598
End: 1663317
Strand: Direct
Name: potA [H]
Synonym: mlr2025
Alternate gene names: 13471905
Gene position: 1662598-1663317 (Clockwise)
Preceding gene: 13471904
Following gene: 13471907
Centisome position: 23.63
GC content: 66.81
Gene sequence:
>720_bases ATGGTGCGGCTGCCGGGCAGCGAGAAGAAGCTGCCGTCGCAGCTGTCGGGCGGGCAGCAGCAGCGCATCGCGCTTGCCCG CGCCATCGTCTTCGAGCCGCAGGTGCTGCTGCTCGACGAGCCGCTGTCGGCGCTGGACGCGAACATGCGCGAGGAGATGC GCGTCGAGATCAAGAAGATCCAGAAGGAAACCGGCATCACCGCCATCTTCGTCACCCACGACCAGGAGGAAGCGCTCTCC ATGTCGGATCGCATCGTGGTGATGAACGCCGGCGCTGTGGAGCAGATCGGAACCCCGCAGGAGGTCTATGAAACGCCCGC CACGGCCTTCGTCGCCGACTTCCTCGGCAAGGCCAACATGCTGGCCGGCACCGTGAGCCGGTCCGGCCAGGCAATGGCGG TGACGCTTGCCACTGGCCAGACGGTCGAGGTCGCCTGTCCAAGGCCGCCTGCACAGGGCAGCAAGGTCACAGTCGTGCTG CGGCCGCAGAAACTGTCGATCGGCGCGGCGGCAGGCCCCAACAGGCTGTCCGGCCGTGTCGTCTCGGCCTCGTATCTGGG CGGCAGCGCCATCTATGAGGTCGACATCGGCGGCAAGACCGTCATCCGCGCCAACGCGCCGATCACCGGCCGCGTCCTTC GCGAAGGCGAGGCGATCGACCTCGGATTCGATCCCGAAGGCTGCGTTCTGCTCGATGAGGACGGTCAGCGCATTTCGTGA
Upstream 100 bases:
>100_bases CTGTTCCCGCACAAGAACGTCTTCGACAACGTCGCCTTCGGCCTGAAGTACCGCAACGTGCCGAAGCCCGAGATCGTGCG CAAGGTGCCAGGCGCTCGAA
Downstream 100 bases:
>100_bases CGCAAGTCGCCCAGGAGCCGGCCCGGCTCGAGCGGCGCTACGCGGCCGGCTTCATTGCCCCGCCGAGACGCTCGCCAGGC GGTTGGGATGCCTGAGATGG
Product: ATP-binding protein of spermidine/putrescine ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 239; Mature: 239
Protein sequence:
>239_residues MVRLPGSEKKLPSQLSGGQQQRIALARAIVFEPQVLLLDEPLSALDANMREEMRVEIKKIQKETGITAIFVTHDQEEALS MSDRIVVMNAGAVEQIGTPQEVYETPATAFVADFLGKANMLAGTVSRSGQAMAVTLATGQTVEVACPRPPAQGSKVTVVL RPQKLSIGAAAGPNRLSGRVVSASYLGGSAIYEVDIGGKTVIRANAPITGRVLREGEAIDLGFDPEGCVLLDEDGQRIS
Sequences:
>Translated_239_residues MVRLPGSEKKLPSQLSGGQQQRIALARAIVFEPQVLLLDEPLSALDANMREEMRVEIKKIQKETGITAIFVTHDQEEALS MSDRIVVMNAGAVEQIGTPQEVYETPATAFVADFLGKANMLAGTVSRSGQAMAVTLATGQTVEVACPRPPAQGSKVTVVL RPQKLSIGAAAGPNRLSGRVVSASYLGGSAIYEVDIGGKTVIRANAPITGRVLREGEAIDLGFDPEGCVLLDEDGQRIS >Mature_239_residues MVRLPGSEKKLPSQLSGGQQQRIALARAIVFEPQVLLLDEPLSALDANMREEMRVEIKKIQKETGITAIFVTHDQEEALS MSDRIVVMNAGAVEQIGTPQEVYETPATAFVADFLGKANMLAGTVSRSGQAMAVTLATGQTVEVACPRPPAQGSKVTVVL RPQKLSIGAAAGPNRLSGRVVSASYLGGSAIYEVDIGGKTVIRANAPITGRVLREGEAIDLGFDPEGCVLLDEDGQRIS
Specific function: Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI148612844, Length=98, Percent_Identity=40.8163265306122, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI255708477, Length=90, Percent_Identity=43.3333333333333, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9961252, Length=98, Percent_Identity=39.7959183673469, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI4505771, Length=98, Percent_Identity=39.7959183673469, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI9961250, Length=98, Percent_Identity=39.7959183673469, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI89111135, Length=92, Percent_Identity=42.3913043478261, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI42741659, Length=98, Percent_Identity=39.7959183673469, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1787370, Length=207, Percent_Identity=44.9275362318841, Blast_Score=166, Evalue=1e-42, Organism=Escherichia coli, GI1787712, Length=207, Percent_Identity=41.5458937198068, Blast_Score=157, Evalue=7e-40, Organism=Escherichia coli, GI87081791, Length=240, Percent_Identity=35.8333333333333, Blast_Score=155, Evalue=3e-39, Organism=Escherichia coli, GI87081709, Length=126, Percent_Identity=53.968253968254, Blast_Score=154, Evalue=6e-39, Organism=Escherichia coli, GI1788761, Length=169, Percent_Identity=46.1538461538462, Blast_Score=149, Evalue=1e-37, Organism=Escherichia coli, GI87082267, Length=173, Percent_Identity=42.7745664739884, Blast_Score=145, Evalue=2e-36, Organism=Escherichia coli, GI1790467, Length=233, Percent_Identity=39.0557939914163, Blast_Score=144, Evalue=7e-36, Organism=Escherichia coli, GI1788450, Length=164, Percent_Identity=37.8048780487805, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1789032, Length=114, Percent_Identity=42.9824561403509, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1787500, Length=107, Percent_Identity=38.3177570093458, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1786563, Length=127, Percent_Identity=41.7322834645669, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787164, Length=84, Percent_Identity=50, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787758, Length=111, Percent_Identity=36.9369369369369, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789672, Length=116, Percent_Identity=35.3448275862069, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI145693107, Length=113, Percent_Identity=34.5132743362832, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787029, Length=104, Percent_Identity=38.4615384615385, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788644, Length=106, Percent_Identity=39.622641509434, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786872, Length=116, Percent_Identity=37.0689655172414, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1788506, Length=112, Percent_Identity=29.4642857142857, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1787089, Length=116, Percent_Identity=39.6551724137931, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1789962, Length=106, Percent_Identity=33.0188679245283, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1788225, Length=116, Percent_Identity=37.9310344827586, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1786253, Length=100, Percent_Identity=41, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1786398, Length=115, Percent_Identity=34.7826086956522, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1786981, Length=212, Percent_Identity=33.0188679245283, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI48994883, Length=112, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1789891, Length=84, Percent_Identity=41.6666666666667, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787547, Length=103, Percent_Identity=34.9514563106796, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1790162, Length=104, Percent_Identity=37.5, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1789864, Length=106, Percent_Identity=32.0754716981132, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787759, Length=109, Percent_Identity=31.1926605504587, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789963, Length=104, Percent_Identity=30.7692307692308, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1790190, Length=92, Percent_Identity=39.1304347826087, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI48994997, Length=100, Percent_Identity=32, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786698, Length=82, Percent_Identity=39.0243902439024, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI48994943, Length=103, Percent_Identity=36.8932038834951, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1787105, Length=91, Percent_Identity=40.6593406593407, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1790544, Length=89, Percent_Identity=38.2022471910112, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786703, Length=86, Percent_Identity=40.6976744186046, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786345, Length=94, Percent_Identity=35.1063829787234, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17511077, Length=92, Percent_Identity=47.8260869565217, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI71992290, Length=85, Percent_Identity=47.0588235294118, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193208177, Length=98, Percent_Identity=37.7551020408163, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI25146777, Length=90, Percent_Identity=40, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193209708, Length=89, Percent_Identity=41.5730337078652, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71984940, Length=89, Percent_Identity=43.8202247191011, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115534520, Length=89, Percent_Identity=37.0786516853933, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17558664, Length=91, Percent_Identity=41.7582417582418, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI193202349, Length=89, Percent_Identity=43.8202247191011, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115535101, Length=97, Percent_Identity=39.1752577319588, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17569081, Length=92, Percent_Identity=38.0434782608696, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=96, Percent_Identity=39.5833333333333, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6324985, Length=96, Percent_Identity=34.375, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=97, Percent_Identity=40.2061855670103, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI85726357, Length=113, Percent_Identity=41.5929203539823, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI281363262, Length=92, Percent_Identity=44.5652173913043, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24653245, Length=92, Percent_Identity=44.5652173913043, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR008995 - InterPro: IPR017879 - InterPro: IPR005893 - InterPro: IPR013611 [H]
Pfam domain/function: PF00005 ABC_tran; PF08402 TOBE_2 [H]
EC number: =3.6.3.31 [H]
Molecular weight: Translated: 25309; Mature: 25309
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS00211 ABC_TRANSPORTER_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRLPGSEKKLPSQLSGGQQQRIALARAIVFEPQVLLLDEPLSALDANMREEMRVEIKKI CCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCEEEEEECCHHHHCCCHHHHHHHHHHHH QKETGITAIFVTHDQEEALSMSDRIVVMNAGAVEQIGTPQEVYETPATAFVADFLGKANM HHHCCEEEEEEECCHHHHHCCCCEEEEEECCCHHHCCCCHHHHHCCHHHHHHHHHCCCHH LAGTVSRSGQAMAVTLATGQTVEVACPRPPAQGSKVTVVLRPQKLSIGAAAGPNRLSGRV EEEECCCCCCEEEEEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEE VSASYLGGSAIYEVDIGGKTVIRANAPITGRVLREGEAIDLGFDPEGCVLLDEDGQRIS EEEEECCCCEEEEEECCCEEEEEECCCEEEEEEECCCEEEECCCCCCEEEECCCCCCCC >Mature Secondary Structure MVRLPGSEKKLPSQLSGGQQQRIALARAIVFEPQVLLLDEPLSALDANMREEMRVEIKKI CCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCEEEEEECCHHHHCCCHHHHHHHHHHHH QKETGITAIFVTHDQEEALSMSDRIVVMNAGAVEQIGTPQEVYETPATAFVADFLGKANM HHHCCEEEEEEECCHHHHHCCCCEEEEEECCCHHHCCCCHHHHHCCHHHHHHHHHCCCHH LAGTVSRSGQAMAVTLATGQTVEVACPRPPAQGSKVTVVLRPQKLSIGAAAGPNRLSGRV EEEECCCCCCEEEEEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEE VSASYLGGSAIYEVDIGGKTVIRANAPITGRVLREGEAIDLGFDPEGCVLLDEDGQRIS EEEEECCCCEEEEEECCCEEEEEECCCEEEEEEECCCEEEECCCCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA