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The map label for this gene is potA [H]

Identifier: 13471904

GI number: 13471904

Start: 1662192

End: 1662908

Strand: Direct

Name: potA [H]

Synonym: mlr2024

Alternate gene names: 13471904

Gene position: 1662192-1662908 (Clockwise)

Preceding gene: 13471903

Following gene: 13471905

Centisome position: 23.62

GC content: 65.83

Gene sequence:

>717_bases
GTGGCAAGGCCCGGCGCGGGCGCACCCGCTCCGAGCGGCGCCGGGACCGGCCAGCCGGCGGTCGAGTTCCGCGACATCGA
CATCGCCTATGGCAAGTTCGTCGCCGTGCGCGATTTCTCGCTCTCCATCGCCAAGGGCAGCTTCGTCACGTTGCTCGGGC
CTTCGGGCTGCGGCAAGACGACGATCCTGCGCTCCATCGCCGGCCTCGTCGACATTTCGGGCGGCCAGATCATGATCGAC
GGGCGCCGGGTGGACGATGTGCCGATCTACAAGCGCAATATCGGCCTGGTCTTCCAGAGCTATGCGCTGTTCCCGCACAA
GAACGTCTTCGACAACGTCGCCTTCGGCCTGAAGTACCGCAACGTGCCGAAGCCCGAGATCGTGCGCAAGGTGCCAGGCG
CTCGAAATGGTGCGGCTGCCGGGCAGCGAGAAGAAGCTGCCGTCGCAGCTGTCGGGCGGGCAGCAGCAGCGCATCGCGCT
TGCCCGCGCCATCGTCTTCGAGCCGCAGGTGCTGCTGCTCGACGAGCCGCTGTCGGCGCTGGACGCGAACATGCGCGAGG
AGATGCGCGTCGAGATCAAGAAGATCCAGAAGGAAACCGGCATCACCGCCATCTTCGTCACCCACGACCAGGAGGAAGCG
CTCTCCATGTCGGATCGCATCGTGGTGATGAACGCCGGCGCTGTGGAGCAGATCGGAACCCCGCAGGAGGTCTATGA

Upstream 100 bases:

>100_bases
GCGACCAACGAGGACGCCTGGACCAAGCAGTGGAACAGGATCTCGAAAGGTGCCTGACAGAAACGACCTTTCAGAAGTGC
CCCGGCCGGAAGCGGCCGGG

Downstream 100 bases:

>100_bases
AACGCCCGCCACGGCCTTCGTCGCCGACTTCCTCGGCAAGGCCAACATGCTGGCCGGCACCGTGAGCCGGTCCGGCCAGG
CAATGGCGGTGACGCTTGCC

Product: ATP-binding protein of spermidine/putrescine ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MARPGAGAPAPSGAGTGQPAVEFRDIDIAYGKFVAVRDFSLSIAKGSFVTLLGPSGCGKTTILRSIAGLVDISGGQIMID
GRRVDDVPIYKRNIGLVFQSYALFPHKNVFDNVAFGLKYRNVPKPEIVRKVPGARNGAAAGQREEAAVAAVGRAAAAHRA
CPRHRLRAAGAAARRAAVGAGREHARGDARRDQEDPEGNRHHRHLRHPRPGGSALHVGSHRGDERRRCGADRNPAGGL

Sequences:

>Translated_238_residues
MARPGAGAPAPSGAGTGQPAVEFRDIDIAYGKFVAVRDFSLSIAKGSFVTLLGPSGCGKTTILRSIAGLVDISGGQIMID
GRRVDDVPIYKRNIGLVFQSYALFPHKNVFDNVAFGLKYRNVPKPEIVRKVPGARNGAAAGQREEAAVAAVGRAAAAHRA
CPRHRLRAAGAAARRAAVGAGREHARGDARRDQEDPEGNRHHRHLRHPRPGGSALHVGSHRGDERRRCGADRNPAGGL
>Mature_237_residues
ARPGAGAPAPSGAGTGQPAVEFRDIDIAYGKFVAVRDFSLSIAKGSFVTLLGPSGCGKTTILRSIAGLVDISGGQIMIDG
RRVDDVPIYKRNIGLVFQSYALFPHKNVFDNVAFGLKYRNVPKPEIVRKVPGARNGAAAGQREEAAVAAVGRAAAAHRAC
PRHRLRAAGAAARRAAVGAGREHARGDARRDQEDPEGNRHHRHLRHPRPGGSALHVGSHRGDERRRCGADRNPAGGL

Specific function: Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI171184400, Length=127, Percent_Identity=34.6456692913386, Blast_Score=64, Evalue=8e-11,
Organism=Escherichia coli, GI87081791, Length=113, Percent_Identity=51.3274336283186, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87081709, Length=119, Percent_Identity=48.7394957983193, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787370, Length=96, Percent_Identity=54.1666666666667, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790467, Length=112, Percent_Identity=44.6428571428571, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787712, Length=107, Percent_Identity=47.6635514018692, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI87082267, Length=104, Percent_Identity=43.2692307692308, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI1788761, Length=98, Percent_Identity=47.9591836734694, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787029, Length=111, Percent_Identity=38.7387387387387, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1790162, Length=163, Percent_Identity=27.6073619631902, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786563, Length=97, Percent_Identity=44.3298969072165, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789032, Length=102, Percent_Identity=35.2941176470588, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789672, Length=117, Percent_Identity=31.6239316239316, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789586, Length=113, Percent_Identity=35.3982300884956, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788450, Length=96, Percent_Identity=37.5, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994943, Length=122, Percent_Identity=30.327868852459, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786253, Length=145, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786398, Length=117, Percent_Identity=29.0598290598291, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788225, Length=170, Percent_Identity=30.5882352941176, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786872, Length=100, Percent_Identity=32, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR008995
- InterPro:   IPR017879
- InterPro:   IPR005893
- InterPro:   IPR013611 [H]

Pfam domain/function: PF00005 ABC_tran; PF08402 TOBE_2 [H]

EC number: =3.6.3.31 [H]

Molecular weight: Translated: 25174; Mature: 25043

Theoretical pI: Translated: 11.57; Mature: 11.57

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPGAGAPAPSGAGTGQPAVEFRDIDIAYGKFVAVRDFSLSIAKGSFVTLLGPSGCGKT
CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECEEEEECCCEEEEECCCCCCHH
TILRSIAGLVDISGGQIMIDGRRVDDVPIYKRNIGLVFQSYALFPHKNVFDNVAFGLKYR
HHHHHHHHHEECCCCEEEECCCCCCCCCEEECCCCCEEEHHCCCCCCHHHHHHHHCEEEC
NVPKPEIVRKVPGARNGAAAGQREEAAVAAVGRAAAAHRACPRHRLRAAGAAARRAAVGA
CCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
GREHARGDARRDQEDPEGNRHHRHLRHPRPGGSALHVGSHRGDERRRCGADRNPAGGL
CHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ARPGAGAPAPSGAGTGQPAVEFRDIDIAYGKFVAVRDFSLSIAKGSFVTLLGPSGCGKT
CCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECEEEEECCCEEEEECCCCCCHH
TILRSIAGLVDISGGQIMIDGRRVDDVPIYKRNIGLVFQSYALFPHKNVFDNVAFGLKYR
HHHHHHHHHEECCCCEEEECCCCCCCCCEEECCCCCEEEHHCCCCCCHHHHHHHHCEEEC
NVPKPEIVRKVPGARNGAAAGQREEAAVAAVGRAAAAHRACPRHRLRAAGAAARRAAVGA
CCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
GREHARGDARRDQEDPEGNRHHRHLRHPRPGGSALHVGSHRGDERRRCGADRNPAGGL
CHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA