| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
Click here to switch to the map view.
The map label for this gene is yusZ [H]
Identifier: 13471804
GI number: 13471804
Start: 1561032
End: 1561868
Strand: Direct
Name: yusZ [H]
Synonym: mlr1899
Alternate gene names: 13471804
Gene position: 1561032-1561868 (Clockwise)
Preceding gene: 13471803
Following gene: 13471806
Centisome position: 22.19
GC content: 62.84
Gene sequence:
>837_bases ATGACAAAGACATGGTTCATCACCGGCGCAAGCAGTGGCTTTGGACGGCAGTTGACGGAGCTCTTGCTCGAACGCGGAGA TCGCGTCGCCGCCACGGTTCGCAAGCCCGACGCTCTCCACGACCTCGCCACCAAATATGGCGAGCGGCTTTGGGTCGGCA TCCTCGATGTGACAGACAGTTCCGCTGTCCGTGACATCGTCGGCAAAGCCTTTGCCGAGCTCAAGCGGATCGACGTCGTC GTCAGCAATGCCGGCTATGCCCTTTTCGGCGCCGCCGAGGAGGTTGCTGACGCACAGATCGAACGCCAGATCGACACGAA TCTTGTCGGCTCGATTTCGGTTGCCCGCGCGGTGATCCCTGATTTGCGCCAGCAAGGGGGTGGCCGGATTGTCCAGATTT CGTCTTCCGTAGGACAGTCGGCCTATCCGACGATGGGCGTCTATGCCGCCACCAAATGGGGCATTGAGGGCTTCTACGAG GGCACTATCCCGGAGATCGCGCCGTTCGGCATCGAGGTGACCCTGGTCGAACCGGGTGCCTCGCGCACAAACTTCGCGTC GTCCAGCGCGGATGCCGGACAGATCCTCGACGTCTACGACCAGACGCCGGTCGGGGACTTCCGTCGCCTGGTCGCATCGG CTGGTCTCGCCATGTTTCCCGGAGATCCTCGCAAGGTCGCTTCGGCGATCATCGCATCAGCGGAGCAGACCCCGGCACCC AGGAGGCTAACGCTTGGAAGCGACGCCTACGCGCTTGTCCATACCGCGCTGACTGAACGTCTGGCCGCGCTCGAGAGCCA GAAGGCATTGGCCCGCTCCACCGATGTGGACGCCTAG
Upstream 100 bases:
>100_bases CCACGCCACCGGTTGGAACCAAACATTCAGCGAATTGATCGACGCGCACGACGCGGCATAGCCGATTGAACTGATCCGGA AACCTGAAAGGACGTTTATC
Downstream 100 bases:
>100_bases CCAGAACACCGGCGGCGGCCTCGGACACGCAAAGCGATCGTCGAATTAGCGTGGGCGCAATGCGTCGGTCCGCAACTGGC CTATCCGAGTCCGAGCCTGC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: ORFA [H]
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MTKTWFITGASSGFGRQLTELLLERGDRVAATVRKPDALHDLATKYGERLWVGILDVTDSSAVRDIVGKAFAELKRIDVV VSNAGYALFGAAEEVADAQIERQIDTNLVGSISVARAVIPDLRQQGGGRIVQISSSVGQSAYPTMGVYAATKWGIEGFYE GTIPEIAPFGIEVTLVEPGASRTNFASSSADAGQILDVYDQTPVGDFRRLVASAGLAMFPGDPRKVASAIIASAEQTPAP RRLTLGSDAYALVHTALTERLAALESQKALARSTDVDA
Sequences:
>Translated_278_residues MTKTWFITGASSGFGRQLTELLLERGDRVAATVRKPDALHDLATKYGERLWVGILDVTDSSAVRDIVGKAFAELKRIDVV VSNAGYALFGAAEEVADAQIERQIDTNLVGSISVARAVIPDLRQQGGGRIVQISSSVGQSAYPTMGVYAATKWGIEGFYE GTIPEIAPFGIEVTLVEPGASRTNFASSSADAGQILDVYDQTPVGDFRRLVASAGLAMFPGDPRKVASAIIASAEQTPAP RRLTLGSDAYALVHTALTERLAALESQKALARSTDVDA >Mature_277_residues TKTWFITGASSGFGRQLTELLLERGDRVAATVRKPDALHDLATKYGERLWVGILDVTDSSAVRDIVGKAFAELKRIDVVV SNAGYALFGAAEEVADAQIERQIDTNLVGSISVARAVIPDLRQQGGGRIVQISSSVGQSAYPTMGVYAATKWGIEGFYEG TIPEIAPFGIEVTLVEPGASRTNFASSSADAGQILDVYDQTPVGDFRRLVASAGLAMFPGDPRKVASAIIASAEQTPAPR RLTLGSDAYALVHTALTERLAALESQKALARSTDVDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=252, Percent_Identity=31.3492063492063, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI223718074, Length=225, Percent_Identity=31.5555555555556, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI22507405, Length=206, Percent_Identity=32.0388349514563, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI20149619, Length=206, Percent_Identity=28.6407766990291, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI50726952, Length=181, Percent_Identity=35.9116022099448, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI150247226, Length=200, Percent_Identity=32, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI44680136, Length=197, Percent_Identity=31.4720812182741, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI44680133, Length=197, Percent_Identity=31.4720812182741, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI17738292, Length=197, Percent_Identity=31.4720812182741, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI4503817, Length=271, Percent_Identity=27.3062730627306, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI7706318, Length=198, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI19743808, Length=206, Percent_Identity=30.0970873786408, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI40254992, Length=219, Percent_Identity=26.9406392694064, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI40548397, Length=200, Percent_Identity=29.5, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI214010158, Length=200, Percent_Identity=29.5, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI214010156, Length=200, Percent_Identity=29.5, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI22758144, Length=200, Percent_Identity=29.5, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI119392083, Length=194, Percent_Identity=28.8659793814433, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI32483357, Length=189, Percent_Identity=27.5132275132275, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI157739938, Length=192, Percent_Identity=22.9166666666667, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI142976729, Length=186, Percent_Identity=23.1182795698925, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI7705925, Length=204, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1787820, Length=201, Percent_Identity=31.8407960199005, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1786701, Length=190, Percent_Identity=31.5789473684211, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787335, Length=203, Percent_Identity=30.5418719211823, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI87082100, Length=191, Percent_Identity=32.9842931937173, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786812, Length=184, Percent_Identity=23.9130434782609, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI2367175, Length=211, Percent_Identity=28.9099526066351, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI71997402, Length=210, Percent_Identity=29.0476190476191, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17507613, Length=208, Percent_Identity=28.3653846153846, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI32563809, Length=208, Percent_Identity=28.3653846153846, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17557780, Length=209, Percent_Identity=25.8373205741627, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17570069, Length=204, Percent_Identity=26.4705882352941, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71994604, Length=234, Percent_Identity=28.6324786324786, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI115534660, Length=201, Percent_Identity=28.8557213930348, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17562904, Length=198, Percent_Identity=30.8080808080808, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193210355, Length=195, Percent_Identity=30.2564102564103, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17567345, Length=186, Percent_Identity=27.4193548387097, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17559104, Length=197, Percent_Identity=28.9340101522843, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17560150, Length=195, Percent_Identity=28.2051282051282, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17562910, Length=194, Percent_Identity=25.2577319587629, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=215, Percent_Identity=31.1627906976744, Blast_Score=94, Evalue=3e-20, Organism=Saccharomyces cerevisiae, GI6322067, Length=174, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6322226, Length=163, Percent_Identity=25.7668711656442, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=27.8350515463918, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI21357041, Length=181, Percent_Identity=31.4917127071823, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24651139, Length=118, Percent_Identity=35.5932203389831, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI28571526, Length=232, Percent_Identity=28.448275862069, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI23397609, Length=233, Percent_Identity=30.0429184549356, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI24644339, Length=234, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24643142, Length=176, Percent_Identity=28.4090909090909, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI116007236, Length=193, Percent_Identity=27.979274611399, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355319, Length=189, Percent_Identity=25.9259259259259, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007238, Length=179, Percent_Identity=27.9329608938547, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29458; Mature: 29326
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKTWFITGASSGFGRQLTELLLERGDRVAATVRKPDALHDLATKYGERLWVGILDVTDS CCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCEEEEEEEECCCC SAVRDIVGKAFAELKRIDVVVSNAGYALFGAAEEVADAQIERQIDTNLVGSISVARAVIP HHHHHHHHHHHHHHHHHHEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLRQQGGGRIVQISSSVGQSAYPTMGVYAATKWGIEGFYEGTIPEIAPFGIEVTLVEPGA HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCC SRTNFASSSADAGQILDVYDQTPVGDFRRLVASAGLAMFPGDPRKVASAIIASAEQTPAP CCCCCCCCCCCCCCEEHHHCCCCHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHCCCCCC RRLTLGSDAYALVHTALTERLAALESQKALARSTDVDA CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TKTWFITGASSGFGRQLTELLLERGDRVAATVRKPDALHDLATKYGERLWVGILDVTDS CEEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCEEEEEEEECCCC SAVRDIVGKAFAELKRIDVVVSNAGYALFGAAEEVADAQIERQIDTNLVGSISVARAVIP HHHHHHHHHHHHHHHHHHEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLRQQGGGRIVQISSSVGQSAYPTMGVYAATKWGIEGFYEGTIPEIAPFGIEVTLVEPGA HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCC SRTNFASSSADAGQILDVYDQTPVGDFRRLVASAGLAMFPGDPRKVASAIIASAEQTPAP CCCCCCCCCCCCCCEEHHHCCCCHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHCCCCCC RRLTLGSDAYALVHTALTERLAALESQKALARSTDVDA CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353931; 9384377; 8396117 [H]