BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is yohF [C]

Identifier: 13471793

GI number: 13471793

Start: 1550171

End: 1550953

Strand: Direct

Name: yohF [C]

Synonym: mlr1884

Alternate gene names: 13471793

Gene position: 1550171-1550953 (Clockwise)

Preceding gene: 13471792

Following gene: 13471794

Centisome position: 22.03

GC content: 68.45

Gene sequence:

>783_bases
ATGGAGCTTCATCTCCAAGGCAAGGTCGTGCTGGTCACCGGCGCGACGCAAGGCATCGGCCGCGCCATTGCCGAGGCGCT
CGCGCGGGCCGGCGCCGGCGGGCTGCTGATCACCGGACGCGACCGCAAACGCGGCGACGCCGTGGCGGCGGAATTGTCGG
CCATCGGCACGCCGACTATCTTCGTCGCCGCCGACCTTGGAGACACGCAGACCCCAGCCTTGCTGGCGCAGGCCTGCATT
GAGCGCTTCGGCCGCATCGACGGCCTCGTCAACGCCGCCGGCCTGACCGACCGCGCCTCCTTCCTCGATGCCGGCCTCGA
CGACTGGGCCGCGCTGTTCGCCGTCAATGCGCGCGCGCCGTTCTTCCTGATGCAGGCGGCGATTGCCGACATGAGGAAGC
GCGGGGAGCCCGGCGCGATTGTCAACATCCTGTCGATCAACGCCCATTGCGGCTCCCCCGAACTCGCCGTCTATTCCGCC
ACCAAGGGTGCGCTGGCGACGCTGACCAAGAACGCCGCCAACGCCCACCGTTTCGACCGCATCCGCGTCAACGGCATCAA
TGTCGGCTGGACCGACACGCCGGCCGAACGCGTGATGCAGTCTAAGACATTGGGTCACGGCCCGGGCTGGCTCGACGCCG
CCAATGCCGCGCAGCCTTTCGGCAGATTGCTCAAGCCGGACGACATCGCCAACCTGTCCGTCTTCCTGCTTTCCGACGCG
GCCGGGCCGATGACCGGCGCTGTGATCGACCAGGAGCAGTCGGTGATCGGGGCGAACCGGTGA

Upstream 100 bases:

>100_bases
CGCGGCAAAACGCGGCGCATGAGGCGCTGCTGGCACAATTGACTATCGGGAATTGCCGTTCCATATTTTAAAAAATAGAA
ACTTTGTTCCGGGAGGAGGA

Downstream 100 bases:

>100_bases
ACGCGGCTTCGACAGCGCCGGAAACACTCGGTCCAGCCTTGCTGGACCAGCTTCCGGCCGCTGTCCGGACGCCTGGATAT
GACCGGACAACCCTTGCGCC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MELHLQGKVVLVTGATQGIGRAIAEALARAGAGGLLITGRDRKRGDAVAAELSAIGTPTIFVAADLGDTQTPALLAQACI
ERFGRIDGLVNAAGLTDRASFLDAGLDDWAALFAVNARAPFFLMQAAIADMRKRGEPGAIVNILSINAHCGSPELAVYSA
TKGALATLTKNAANAHRFDRIRVNGINVGWTDTPAERVMQSKTLGHGPGWLDAANAAQPFGRLLKPDDIANLSVFLLSDA
AGPMTGAVIDQEQSVIGANR

Sequences:

>Translated_260_residues
MELHLQGKVVLVTGATQGIGRAIAEALARAGAGGLLITGRDRKRGDAVAAELSAIGTPTIFVAADLGDTQTPALLAQACI
ERFGRIDGLVNAAGLTDRASFLDAGLDDWAALFAVNARAPFFLMQAAIADMRKRGEPGAIVNILSINAHCGSPELAVYSA
TKGALATLTKNAANAHRFDRIRVNGINVGWTDTPAERVMQSKTLGHGPGWLDAANAAQPFGRLLKPDDIANLSVFLLSDA
AGPMTGAVIDQEQSVIGANR
>Mature_260_residues
MELHLQGKVVLVTGATQGIGRAIAEALARAGAGGLLITGRDRKRGDAVAAELSAIGTPTIFVAADLGDTQTPALLAQACI
ERFGRIDGLVNAAGLTDRASFLDAGLDDWAALFAVNARAPFFLMQAAIADMRKRGEPGAIVNILSINAHCGSPELAVYSA
TKGALATLTKNAANAHRFDRIRVNGINVGWTDTPAERVMQSKTLGHGPGWLDAANAAQPFGRLLKPDDIANLSVFLLSDA
AGPMTGAVIDQEQSVIGANR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705925, Length=262, Percent_Identity=31.2977099236641, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=31.0756972111554, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI15277342, Length=263, Percent_Identity=29.277566539924, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI31542939, Length=254, Percent_Identity=29.9212598425197, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=29.0196078431373, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=30.0813008130081, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI33667109, Length=202, Percent_Identity=31.1881188118812, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI109715829, Length=253, Percent_Identity=29.6442687747036, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=32.5714285714286, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI126723191, Length=199, Percent_Identity=31.1557788944724, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=29.5918367346939, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI66933014, Length=173, Percent_Identity=31.7919075144509, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI4504505, Length=192, Percent_Identity=31.7708333333333, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=26.3779527559055, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1788459, Length=239, Percent_Identity=33.0543933054393, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=34.2629482071713, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=31.6205533596838, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=31.6205533596838, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=31.6, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=30.3643724696356, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=31.4741035856574, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787905, Length=252, Percent_Identity=30.952380952381, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=28.8, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1787526, Length=250, Percent_Identity=29.6, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=29.3650793650794, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=244, Percent_Identity=29.9180327868852, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17561402, Length=247, Percent_Identity=33.6032388663968, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=242, Percent_Identity=32.6446280991736, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=31.5789473684211, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17562906, Length=252, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI193204405, Length=248, Percent_Identity=31.0483870967742, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=29.4820717131474, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=247, Percent_Identity=33.1983805668016, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=245, Percent_Identity=27.7551020408163, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=246, Percent_Identity=29.6747967479675, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=28.968253968254, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=243, Percent_Identity=31.2757201646091, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=30.4, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=252, Percent_Identity=28.1746031746032, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=243, Percent_Identity=30.8641975308642, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=250, Percent_Identity=28, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17563726, Length=248, Percent_Identity=30.241935483871, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=252, Percent_Identity=30.5555555555556, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=239, Percent_Identity=30.1255230125523, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=202, Percent_Identity=31.6831683168317, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=249, Percent_Identity=28.1124497991968, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=248, Percent_Identity=27.8225806451613, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=258, Percent_Identity=24.8062015503876, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=242, Percent_Identity=28.5123966942149, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=253, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17568967, Length=184, Percent_Identity=31.5217391304348, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=192, Percent_Identity=30.7291666666667, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=32.3886639676113, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=32.1285140562249, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI21357041, Length=246, Percent_Identity=29.6747967479675, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=29.1497975708502, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI28571526, Length=245, Percent_Identity=29.7959183673469, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=28.7878787878788, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI17737361, Length=201, Percent_Identity=29.8507462686567, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=29.5275590551181, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=27.6, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26988; Mature: 26988

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELHLQGKVVLVTGATQGIGRAIAEALARAGAGGLLITGRDRKRGDAVAAELSAIGTPTI
CEEEECCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCEE
FVAADLGDTQTPALLAQACIERFGRIDGLVNAAGLTDRASFLDAGLDDWAALFAVNARAP
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHEEECCCCC
FFLMQAAIADMRKRGEPGAIVNILSINAHCGSPELAVYSATKGALATLTKNAANAHRFDR
HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEECCCCHHHHHHHCCCCCHHCCE
IRVNGINVGWTDTPAERVMQSKTLGHGPGWLDAANAAQPFGRLLKPDDIANLSVFLLSDA
EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEECC
AGPMTGAVIDQEQSVIGANR
CCCCCCCEECCCCCCCCCCC
>Mature Secondary Structure
MELHLQGKVVLVTGATQGIGRAIAEALARAGAGGLLITGRDRKRGDAVAAELSAIGTPTI
CEEEECCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCCCEE
FVAADLGDTQTPALLAQACIERFGRIDGLVNAAGLTDRASFLDAGLDDWAALFAVNARAP
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHEEECCCCC
FFLMQAAIADMRKRGEPGAIVNILSINAHCGSPELAVYSATKGALATLTKNAANAHRFDR
HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEECCCCHHHHHHHCCCCCHHCCE
IRVNGINVGWTDTPAERVMQSKTLGHGPGWLDAANAAQPFGRLLKPDDIANLSVFLLSDA
EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEECC
AGPMTGAVIDQEQSVIGANR
CCCCCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]