Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 13471756

GI number: 13471756

Start: 1512127

End: 1513971

Strand: Direct

Name: yciR [C]

Synonym: mlr1828

Alternate gene names: 13471756

Gene position: 1512127-1513971 (Clockwise)

Preceding gene: 13471755

Following gene: 13471758

Centisome position: 21.49

GC content: 62.01

Gene sequence:

>1845_bases
GTGCCGATCATCGGCACGAAGGAGCTCATCACCTGCGACAACACCGATTTCATCCATTCCGGCAATGACGCCGATCGCTC
AGGCTTCATCCTTTCGGTCCCGGTCTTCGGCCAGGATGGCAGCCTGCGCGGCTCCGTCTCGGCGATCATGCTTACCTCGG
CGCTGCGGAAACTGTTGCCGGGCAGCGACTATGTCATCGTCAATTCAGGCTACGGCTTTGAATCCGACCAGCACAAGATG
TCGACGGCCCTGGCGGCGGACTCCCGTGCCTTCACGGCGGCCGACCCCAATCTGATCTATTCCGAAGTCATTCCGCTCTC
GCTCAACGATCCCAGAAGCGCATGGCGTCTGTGGGCCGGTTTCCCCAACAGCCGGTTCGACAACAACATGGACGTCCAGT
CCGTGCGTCAATTCGAACTGGCCGGTTATGCGGCGGTGGCGGTGGTTACGCTGCTGGCGCTGGCATGCTGGTACGCTATC
GGGCGCACGATGACGATGCAGGTCGAGGCCGCAGAGACCCTTGAGCGTCGGGTCGAGCAACGCACCGCCCAGATCCAGCA
CCTCGCCACGCATGATATTCTCACCGGCCTGCCCAACCGAGGCCTGCTGGCCGACACGATGGACGAGGCATTGCGAAGCC
TCAGGGACGACGAGAAGCTGGCCGTCCATTGCGTCGATCTCGACCGTTTCAAGCCGGTCAACGACACGCTCGGCCATCCC
ATAGGCGATCAGCTTCTCGGCGCGGTGGCGAAGCGGTTGAAACACCATGCCGGCGAAACCGCCATGGTCGCCAGAATTGG
CGGGGATGAGTTCGTCATCCTTCAACTCCTGCTCGACGGCAACGACGAGGCCGGTGTGCTGGCAAGCCGTGTCATTCATG
CCCTGTCCGACGAATTCTCCATCCAGGGCCACAAGATCAACATCGGCGGCAGCATCGGCATCGCCGTCTTCCCCGACGAC
GGGCAAAATTCGGAAACCCTTATCCGAAATGCCGACCTTGCCTTGTACAAGGCCAAGATGGAGGGCCGCGGCACGTGCAG
GTCGTTCGAGCCGGGAATGGATGCAAGGCTGCAGGAGCGGCGCCAACTCGAATCCGAACTGGCGCTCGGCGTGAAAAAAG
AACAATTCGTGCTGCATTATCAGCCGCTGCATGACGCAAAGACCTCGCAGCTCACTGGCTTCGAAGCGCTGGTGCGATGG
AACCATCCGCGCCTCGGCCTGCTGGCGCCGTCGGAGTTCATCCAATTGGCCGAGGAGACAGGCGCCATCGACGCGCTTGG
CGAGTGGATCATGCGGCGTGCCTGCGCCGACGCCGCGAAATGGCCCCAGCCCGTCAAGGTCGCGGTCAATCTTTCGCCGG
CCCAGTTCAAACAGCAGGGGCTGTCGCTTCAGGTTGCCGCGGCGCTCGCGGCTTCAGGCCTGCTGCCGTCACGGCTCGAA
CTGGAGATCACCGAGTCGGTGCTGTTGGCGAACAACGAAAACACGCTGAACACGCTGTACAGTCTGCGCGACCTCGGCAT
CTCCATAGCCATGGACGATTTCGGCACCGGCTACTCCTCGCTGAGCTATCTCAGGTCGTTCCCGTTCAACCGCATCAAGA
TCGACCGCAGCTTCGTCAGCCTGATGTGCGAGAGCAGCGAAAGCCGGGCGATCGTCAAGGCCGTCGCTGAACTCGGCACC
ACGCTCGGCATGACAACGACCGCCGAAGGCGTCGAGACCGAGGACCAGTACAGGCTGGTCAAGGAGAATGGCTGCACGGA
TGTCCAGGGCTGGTATTTTGGCCGCCCGATGCCGGCCTCCGAGCTTCATACGCTTTTCGAACAGCCGGAAGCCCTGACCG
CGTAA

Upstream 100 bases:

>100_bases
GCCGGAAGAGGTCGAGACCTATGAATACCACGAGCTGGCCAAACAGCTCGCCTGGCTGAAGACGAACTATCCGAATTCGA
GCGCCATCGACGGGTTGAAT

Downstream 100 bases:

>100_bases
TCTGCCAGACGGCACGATGGCACCGGACGCCACAGCGCTGGTGGCCGCGCAGGATGCTTTTTGGCAAGATCGATAGTGGC
AGCCAGACCAGTTCACCGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 614; Mature: 613

Protein sequence:

>614_residues
MPIIGTKELITCDNTDFIHSGNDADRSGFILSVPVFGQDGSLRGSVSAIMLTSALRKLLPGSDYVIVNSGYGFESDQHKM
STALAADSRAFTAADPNLIYSEVIPLSLNDPRSAWRLWAGFPNSRFDNNMDVQSVRQFELAGYAAVAVVTLLALACWYAI
GRTMTMQVEAAETLERRVEQRTAQIQHLATHDILTGLPNRGLLADTMDEALRSLRDDEKLAVHCVDLDRFKPVNDTLGHP
IGDQLLGAVAKRLKHHAGETAMVARIGGDEFVILQLLLDGNDEAGVLASRVIHALSDEFSIQGHKINIGGSIGIAVFPDD
GQNSETLIRNADLALYKAKMEGRGTCRSFEPGMDARLQERRQLESELALGVKKEQFVLHYQPLHDAKTSQLTGFEALVRW
NHPRLGLLAPSEFIQLAEETGAIDALGEWIMRRACADAAKWPQPVKVAVNLSPAQFKQQGLSLQVAAALAASGLLPSRLE
LEITESVLLANNENTLNTLYSLRDLGISIAMDDFGTGYSSLSYLRSFPFNRIKIDRSFVSLMCESSESRAIVKAVAELGT
TLGMTTTAEGVETEDQYRLVKENGCTDVQGWYFGRPMPASELHTLFEQPEALTA

Sequences:

>Translated_614_residues
MPIIGTKELITCDNTDFIHSGNDADRSGFILSVPVFGQDGSLRGSVSAIMLTSALRKLLPGSDYVIVNSGYGFESDQHKM
STALAADSRAFTAADPNLIYSEVIPLSLNDPRSAWRLWAGFPNSRFDNNMDVQSVRQFELAGYAAVAVVTLLALACWYAI
GRTMTMQVEAAETLERRVEQRTAQIQHLATHDILTGLPNRGLLADTMDEALRSLRDDEKLAVHCVDLDRFKPVNDTLGHP
IGDQLLGAVAKRLKHHAGETAMVARIGGDEFVILQLLLDGNDEAGVLASRVIHALSDEFSIQGHKINIGGSIGIAVFPDD
GQNSETLIRNADLALYKAKMEGRGTCRSFEPGMDARLQERRQLESELALGVKKEQFVLHYQPLHDAKTSQLTGFEALVRW
NHPRLGLLAPSEFIQLAEETGAIDALGEWIMRRACADAAKWPQPVKVAVNLSPAQFKQQGLSLQVAAALAASGLLPSRLE
LEITESVLLANNENTLNTLYSLRDLGISIAMDDFGTGYSSLSYLRSFPFNRIKIDRSFVSLMCESSESRAIVKAVAELGT
TLGMTTTAEGVETEDQYRLVKENGCTDVQGWYFGRPMPASELHTLFEQPEALTA
>Mature_613_residues
PIIGTKELITCDNTDFIHSGNDADRSGFILSVPVFGQDGSLRGSVSAIMLTSALRKLLPGSDYVIVNSGYGFESDQHKMS
TALAADSRAFTAADPNLIYSEVIPLSLNDPRSAWRLWAGFPNSRFDNNMDVQSVRQFELAGYAAVAVVTLLALACWYAIG
RTMTMQVEAAETLERRVEQRTAQIQHLATHDILTGLPNRGLLADTMDEALRSLRDDEKLAVHCVDLDRFKPVNDTLGHPI
GDQLLGAVAKRLKHHAGETAMVARIGGDEFVILQLLLDGNDEAGVLASRVIHALSDEFSIQGHKINIGGSIGIAVFPDDG
QNSETLIRNADLALYKAKMEGRGTCRSFEPGMDARLQERRQLESELALGVKKEQFVLHYQPLHDAKTSQLTGFEALVRWN
HPRLGLLAPSEFIQLAEETGAIDALGEWIMRRACADAAKWPQPVKVAVNLSPAQFKQQGLSLQVAAALAASGLLPSRLEL
EITESVLLANNENTLNTLYSLRDLGISIAMDDFGTGYSSLSYLRSFPFNRIKIDRSFVSLMCESSESRAIVKAVAELGTT
LGMTTTAEGVETEDQYRLVKENGCTDVQGWYFGRPMPASELHTLFEQPEALTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=442, Percent_Identity=36.6515837104072, Blast_Score=271, Evalue=1e-73,
Organism=Escherichia coli, GI87081921, Length=441, Percent_Identity=34.2403628117914, Blast_Score=248, Evalue=9e-67,
Organism=Escherichia coli, GI1788502, Length=261, Percent_Identity=33.3333333333333, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI226510982, Length=433, Percent_Identity=25.635103926097, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI1790496, Length=255, Percent_Identity=33.3333333333333, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI1786507, Length=241, Percent_Identity=33.195020746888, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI87081845, Length=257, Percent_Identity=33.4630350194552, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI87081980, Length=241, Percent_Identity=31.5352697095436, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1787055, Length=260, Percent_Identity=30.7692307692308, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=29.6296296296296, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=264, Percent_Identity=28.7878787878788, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI1788381, Length=180, Percent_Identity=36.1111111111111, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI87082096, Length=443, Percent_Identity=23.7020316027088, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=38.3647798742138, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1788956, Length=179, Percent_Identity=31.8435754189944, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=28.9017341040462, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI145693134, Length=175, Percent_Identity=32, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=32.5842696629214, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=32.7272727272727, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081977, Length=166, Percent_Identity=28.9156626506024, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787410, Length=219, Percent_Identity=25.1141552511416, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787802, Length=195, Percent_Identity=27.6923076923077, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87082007, Length=204, Percent_Identity=30.8823529411765, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787056, Length=214, Percent_Identity=29.9065420560748, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87082280, Length=126, Percent_Identity=30.1587301587302, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 67180; Mature: 67049

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIIGTKELITCDNTDFIHSGNDADRSGFILSVPVFGQDGSLRGSVSAIMLTSALRKLLP
CCCCCCCCEEEECCCCCEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCC
GSDYVIVNSGYGFESDQHKMSTALAADSRAFTAADPNLIYSEVIPLSLNDPRSAWRLWAG
CCCEEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEHHEEEECCCCCHHHHHHHCC
FPNSRFDNNMDVQSVRQFELAGYAAVAVVTLLALACWYAIGRTMTMQVEAAETLERRVEQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHH
RTAQIQHLATHDILTGLPNRGLLADTMDEALRSLRDDEKLAVHCVDLDRFKPVNDTLGHP
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHCCC
IGDQLLGAVAKRLKHHAGETAMVARIGGDEFVILQLLLDGNDEAGVLASRVIHALSDEFS
CHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCE
IQGHKINIGGSIGIAVFPDDGQNSETLIRNADLALYKAKMEGRGTCRSFEPGMDARLQER
ECCEEEEECCEEEEEEECCCCCCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHH
RQLESELALGVKKEQFVLHYQPLHDAKTSQLTGFEALVRWNHPRLGLLAPSEFIQLAEET
HHHHHHHHCCCCCCEEEEEECCCCCCCCHHCCCHHHHHCCCCCCCEEECHHHHHHHHHHC
GAIDALGEWIMRRACADAAKWPQPVKVAVNLSPAQFKQQGLSLQVAAALAASGLLPSRLE
CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCEEHHHHHHHCCCCCCCEE
LEITESVLLANNENTLNTLYSLRDLGISIAMDDFGTGYSSLSYLRSFPFNRIKIDRSFVS
EEEECEEEEECCCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCEEEEHHHHHH
LMCESSESRAIVKAVAELGTTLGMTTTAEGVETEDQYRLVKENGCTDVQGWYFGRPMPAS
HHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCHH
ELHTLFEQPEALTA
HHHHHHCCCCCCCC
>Mature Secondary Structure 
PIIGTKELITCDNTDFIHSGNDADRSGFILSVPVFGQDGSLRGSVSAIMLTSALRKLLP
CCCCCCCEEEECCCCCEECCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCC
GSDYVIVNSGYGFESDQHKMSTALAADSRAFTAADPNLIYSEVIPLSLNDPRSAWRLWAG
CCCEEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEHHEEEECCCCCHHHHHHHCC
FPNSRFDNNMDVQSVRQFELAGYAAVAVVTLLALACWYAIGRTMTMQVEAAETLERRVEQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHH
RTAQIQHLATHDILTGLPNRGLLADTMDEALRSLRDDEKLAVHCVDLDRFKPVNDTLGHP
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHCCC
IGDQLLGAVAKRLKHHAGETAMVARIGGDEFVILQLLLDGNDEAGVLASRVIHALSDEFS
CHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCE
IQGHKINIGGSIGIAVFPDDGQNSETLIRNADLALYKAKMEGRGTCRSFEPGMDARLQER
ECCEEEEECCEEEEEEECCCCCCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHH
RQLESELALGVKKEQFVLHYQPLHDAKTSQLTGFEALVRWNHPRLGLLAPSEFIQLAEET
HHHHHHHHCCCCCCEEEEEECCCCCCCCHHCCCHHHHHCCCCCCCEEECHHHHHHHHHHC
GAIDALGEWIMRRACADAAKWPQPVKVAVNLSPAQFKQQGLSLQVAAALAASGLLPSRLE
CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCEEHHHHHHHCCCCCCCEE
LEITESVLLANNENTLNTLYSLRDLGISIAMDDFGTGYSSLSYLRSFPFNRIKIDRSFVS
EEEECEEEEECCCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCEEEEHHHHHH
LMCESSESRAIVKAVAELGTTLGMTTTAEGVETEDQYRLVKENGCTDVQGWYFGRPMPAS
HHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCHH
ELHTLFEQPEALTA
HHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]