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The map label for this gene is ydaM [H]

Identifier: 13471591

GI number: 13471591

Start: 1338839

End: 1340182

Strand: Direct

Name: ydaM [H]

Synonym: mlr1609

Alternate gene names: 13471591

Gene position: 1338839-1340182 (Clockwise)

Preceding gene: 13471585

Following gene: 13471592

Centisome position: 19.03

GC content: 64.88

Gene sequence:

>1344_bases
ATGGGGGTGGAATCGCTGGCTGGCCGCGATTCCTGTAGAGAAAGCGGATCGACGGCAGTGCTGAACAGTTTCCTGCTCCT
CGCCGAGGCGGTCGTTTACTTCAGCGTCATGGTGACGCTTTTCCGCTTCCGCAAGCGTATTGGCCTCGGCGTCTTCGTCT
GCGCGCTCGGCGTCATGCATTTCCTGGAAACCTATCTCGCCAGCGTCTTCTATGTCGCCTTGCCGTTCGGCTTGGTTTCG
CCGGGCTCGGCGGTGCTGTTTTCCGGCAAGCTGGTCATGCTGCTCCTGCTCTACATCAAGGAGGACGCCGCCACCGTGCG
CCAGCCCATCTATGGCCTGCTGCTCGGCAATGCACTGATGATCGGGCTGGTGCTGCTCTTGCGCCTGCACGTCATCGCGC
CGCTCCCCGACGGCAAGCTGCCCGACATCGGCTTCATCGACGAGATGGGCTGGCTGATGGTGTGGGGCACGACGCTCTTG
GTCATCGACGCCATCCTGATCATCCTCCTCTATGAAAGACTGGGGCGCACCCTGCGCAAGGCGCAATTCGCGCGCATCCT
GATTTGCGTCGCCTGCGTGCTGACCTTCGACCAGGCGGGCTTCTTCACTGCACTGCATTTCGTCGCCGGCGCGCCGATCG
CGGTCTTCTTCGGCGGCTGGTTTGCCAAGATGGCGGCGGCGCTGGCCTTCAGCGGCATGCTCGTGGCCTACCTCAGATGG
TTCGAGGCCCGCGACATCGCGCTGCCGCGTGGGCTGACCGACATTTTCGAAACGCTGACCTATCGCGAGCGCTATGAGGC
GCTGGTCGAGCATGCCGGCCGCGACGGCCTGACCGGCCTGCTGCACCGCGGCCGCTTCGACGCCGACGGTGAAGCCGCCG
TCGAGGTCAGCCTGCGCACGGCGAGGCCCCTCAGCCTGCTGATCATCGATGTCGACCATTTCAAGTCGATCAACGACCGT
TTCGGCCATGCCGAAGGCGACAAGGTGCTGAAAGGGGTAGCAAGCCTGCTTAGCGAAGTGGCGAGCGCCGGGGACCAGGT
GTTCCGCATCGGCGGCGAGGAATTCGCCATCCTCAGTTCGCGCCCGCATCCGGTCGCCAGGCTGTTTGGCGAAAGCATCC
GCCACGCCGTCAAGGCATCGGCGGTGGCCAGCCGTTTCGAGCTGACCGTCAGCGCCGGCGTTTCAACCGTCAGCGAAACG
ACGCGCTGTCTTGCCGATCTGTTCGCCCTCGCCGACCAGCGCCTCTACAAGGCGAAGTCGACCGGACGCGACCGCGTCGT
CGGCGAGCCGGCCGGCCATGAGCCGGACGCCGCCATCGCCTGGACCAGGTCGGCGCAGTTCTGA

Upstream 100 bases:

>100_bases
CAAGCCGAACACACGGACAAGTGTGTGCTTCCCGCCGAAGTTTTCCGCCGGTCACCAGGCGCGTTGAAATCTCCGGTTAA
CCCTTCAGCGTCAAAACAGG

Downstream 100 bases:

>100_bases
TCTAGGATTTTCTCTGTCGCGCAATGCCGGTCAGCAGTGTCCTTACTGGAACCCGATCGCGTCGACGGTGCCTATCGGGC
AACCGGCCTTGTTGGTCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MGVESLAGRDSCRESGSTAVLNSFLLLAEAVVYFSVMVTLFRFRKRIGLGVFVCALGVMHFLETYLASVFYVALPFGLVS
PGSAVLFSGKLVMLLLLYIKEDAATVRQPIYGLLLGNALMIGLVLLLRLHVIAPLPDGKLPDIGFIDEMGWLMVWGTTLL
VIDAILIILLYERLGRTLRKAQFARILICVACVLTFDQAGFFTALHFVAGAPIAVFFGGWFAKMAAALAFSGMLVAYLRW
FEARDIALPRGLTDIFETLTYRERYEALVEHAGRDGLTGLLHRGRFDADGEAAVEVSLRTARPLSLLIIDVDHFKSINDR
FGHAEGDKVLKGVASLLSEVASAGDQVFRIGGEEFAILSSRPHPVARLFGESIRHAVKASAVASRFELTVSAGVSTVSET
TRCLADLFALADQRLYKAKSTGRDRVVGEPAGHEPDAAIAWTRSAQF

Sequences:

>Translated_447_residues
MGVESLAGRDSCRESGSTAVLNSFLLLAEAVVYFSVMVTLFRFRKRIGLGVFVCALGVMHFLETYLASVFYVALPFGLVS
PGSAVLFSGKLVMLLLLYIKEDAATVRQPIYGLLLGNALMIGLVLLLRLHVIAPLPDGKLPDIGFIDEMGWLMVWGTTLL
VIDAILIILLYERLGRTLRKAQFARILICVACVLTFDQAGFFTALHFVAGAPIAVFFGGWFAKMAAALAFSGMLVAYLRW
FEARDIALPRGLTDIFETLTYRERYEALVEHAGRDGLTGLLHRGRFDADGEAAVEVSLRTARPLSLLIIDVDHFKSINDR
FGHAEGDKVLKGVASLLSEVASAGDQVFRIGGEEFAILSSRPHPVARLFGESIRHAVKASAVASRFELTVSAGVSTVSET
TRCLADLFALADQRLYKAKSTGRDRVVGEPAGHEPDAAIAWTRSAQF
>Mature_446_residues
GVESLAGRDSCRESGSTAVLNSFLLLAEAVVYFSVMVTLFRFRKRIGLGVFVCALGVMHFLETYLASVFYVALPFGLVSP
GSAVLFSGKLVMLLLLYIKEDAATVRQPIYGLLLGNALMIGLVLLLRLHVIAPLPDGKLPDIGFIDEMGWLMVWGTTLLV
IDAILIILLYERLGRTLRKAQFARILICVACVLTFDQAGFFTALHFVAGAPIAVFFGGWFAKMAAALAFSGMLVAYLRWF
EARDIALPRGLTDIFETLTYRERYEALVEHAGRDGLTGLLHRGRFDADGEAAVEVSLRTARPLSLLIIDVDHFKSINDRF
GHAEGDKVLKGVASLLSEVASAGDQVFRIGGEEFAILSSRPHPVARLFGESIRHAVKASAVASRFELTVSAGVSTVSETT
RCLADLFALADQRLYKAKSTGRDRVVGEPAGHEPDAAIAWTRSAQF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=40.9090909090909, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=33.9506172839506, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=37.9518072289157, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1786584, Length=280, Percent_Identity=25.7142857142857, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI145693134, Length=171, Percent_Identity=36.2573099415205, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787802, Length=192, Percent_Identity=31.25, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788381, Length=197, Percent_Identity=30.4568527918782, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787056, Length=155, Percent_Identity=34.1935483870968, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787816, Length=196, Percent_Identity=32.6530612244898, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87081974, Length=163, Percent_Identity=28.2208588957055, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788085, Length=204, Percent_Identity=25.4901960784314, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 48679; Mature: 48547

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVESLAGRDSCRESGSTAVLNSFLLLAEAVVYFSVMVTLFRFRKRIGLGVFVCALGVMH
CCCCHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
FLETYLASVFYVALPFGLVSPGSAVLFSGKLVMLLLLYIKEDAATVRQPIYGLLLGNALM
HHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLVLLLRLHVIAPLPDGKLPDIGFIDEMGWLMVWGTTLLVIDAILIILLYERLGRTLRK
HHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQFARILICVACVLTFDQAGFFTALHFVAGAPIAVFFGGWFAKMAAALAFSGMLVAYLRW
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FEARDIALPRGLTDIFETLTYRERYEALVEHAGRDGLTGLLHRGRFDADGEAAVEVSLRT
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCEEEEEEEC
ARPLSLLIIDVDHFKSINDRFGHAEGDKVLKGVASLLSEVASAGDQVFRIGGEEFAILSS
CCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECC
RPHPVARLFGESIRHAVKASAVASRFELTVSAGVSTVSETTRCLADLFALADQRLYKAKS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC
TGRDRVVGEPAGHEPDAAIAWTRSAQF
CCCCCCCCCCCCCCCCCEEEECCCCCC
>Mature Secondary Structure 
GVESLAGRDSCRESGSTAVLNSFLLLAEAVVYFSVMVTLFRFRKRIGLGVFVCALGVMH
CCCHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
FLETYLASVFYVALPFGLVSPGSAVLFSGKLVMLLLLYIKEDAATVRQPIYGLLLGNALM
HHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLVLLLRLHVIAPLPDGKLPDIGFIDEMGWLMVWGTTLLVIDAILIILLYERLGRTLRK
HHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQFARILICVACVLTFDQAGFFTALHFVAGAPIAVFFGGWFAKMAAALAFSGMLVAYLRW
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FEARDIALPRGLTDIFETLTYRERYEALVEHAGRDGLTGLLHRGRFDADGEAAVEVSLRT
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCEEEEEEEC
ARPLSLLIIDVDHFKSINDRFGHAEGDKVLKGVASLLSEVASAGDQVFRIGGEEFAILSS
CCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECC
RPHPVARLFGESIRHAVKASAVASRFELTVSAGVSTVSETTRCLADLFALADQRLYKAKS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC
TGRDRVVGEPAGHEPDAAIAWTRSAQF
CCCCCCCCCCCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]