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The map label for this gene is ycjZ [C]

Identifier: 13471571

GI number: 13471571

Start: 1320386

End: 1321294

Strand: Reverse

Name: ycjZ [C]

Synonym: mll1582

Alternate gene names: 13471571

Gene position: 1321294-1320386 (Counterclockwise)

Preceding gene: 13471573

Following gene: 13471568

Centisome position: 18.78

GC content: 61.94

Gene sequence:

>909_bases
ATGCGCGGATCCGAATTCACCGAACTCAAGGCATTTTCCGCCATCGTCGAAGAAGGCAGTTTCGTTCGTGCCGCCGCGAG
GCTGCGTGTGTCGCCGCCGGCGCTCAGCCAGTCTATCCGGCAGTTGGAGGCGCGCGTCGGCGTCAGGCTCCTCAACCGCA
CGACGCGCAGTGTCTCCGCGACCGCGGCTGGCGATGCACTTTTTTCGCGCCTTGCCGTCGCCTTTGGTGAACTGGAAAGC
GCCATTGCCGATGTTCATGCGGCGCGCGATCGGCCGGCGGGTTCGCTGCGCATCAATGTGCCGCGTGTCGCCGCCATGCG
GTTCATCGCGCCGATCCTCGGAGACTTTCAGCGCGCCTATCCTGATATCGCGCTGACCGTCATCGTCGACGACACGCTGG
CCGACATTGTCGAAGGCCGGTTCGATGCAGGAATCCGGCTCGGCGAACGGCTGGAGAAGGACATGGTGGCGGTGAAACTG
AGCGAGGATTTGCAGATGGCCGCGGTGGCCGCTCCGGCCTATCTCGAGAACCGGGCCATACCTCGTCATCCGCAGGAACT
GCACCAGCACCAATGCATCAAATTCGAATGGCCGGGCGGCGGCAATCTCTATCGATGGGAGTTCGCGCGCGGCAGACGGG
CTCTGGAAATCGCCATCGAAGGCAGCCTGACCGTCAACGATACCGAGCTGATGCTCAATGCCGTGCTGGATGGCGTGGGC
ATTGCCTACATGTTTGAATACCAGGTTCGGCCCTGGATCGAGCAAGGCAGGCTGGTCCGTTTTCTGGAAGCCTGGTCGCC
CAGCTTTCCAGGTTTCTATCTATACCACCCAAGTTCGCGGCACGTGCCGCCGGCCTTGCGGGCGTTCATTGATTTCATGC
GGGCGAGGAGAGCAGTGAATAGTGAGTAG

Upstream 100 bases:

>100_bases
AGCTTTGGGTGCGATGTGGCCGATGGCTGAGAAATAGCGGCATGCAATTGATCAGATAATGCCCTATTATCTGATTGGCT
TGTTAATCCATGGATACATA

Downstream 100 bases:

>100_bases
CACCGCTCTCGTTACAGCTTCGCCAAAAGCTCCGGCGTTGGCCAGCCGTCCACCGGCAGGCCAAGCCGTATCTGCTCCTT
GCGGATCGCTTCGCGGGTGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MRGSEFTELKAFSAIVEEGSFVRAAARLRVSPPALSQSIRQLEARVGVRLLNRTTRSVSATAAGDALFSRLAVAFGELES
AIADVHAARDRPAGSLRINVPRVAAMRFIAPILGDFQRAYPDIALTVIVDDTLADIVEGRFDAGIRLGERLEKDMVAVKL
SEDLQMAAVAAPAYLENRAIPRHPQELHQHQCIKFEWPGGGNLYRWEFARGRRALEIAIEGSLTVNDTELMLNAVLDGVG
IAYMFEYQVRPWIEQGRLVRFLEAWSPSFPGFYLYHPSSRHVPPALRAFIDFMRARRAVNSE

Sequences:

>Translated_302_residues
MRGSEFTELKAFSAIVEEGSFVRAAARLRVSPPALSQSIRQLEARVGVRLLNRTTRSVSATAAGDALFSRLAVAFGELES
AIADVHAARDRPAGSLRINVPRVAAMRFIAPILGDFQRAYPDIALTVIVDDTLADIVEGRFDAGIRLGERLEKDMVAVKL
SEDLQMAAVAAPAYLENRAIPRHPQELHQHQCIKFEWPGGGNLYRWEFARGRRALEIAIEGSLTVNDTELMLNAVLDGVG
IAYMFEYQVRPWIEQGRLVRFLEAWSPSFPGFYLYHPSSRHVPPALRAFIDFMRARRAVNSE
>Mature_302_residues
MRGSEFTELKAFSAIVEEGSFVRAAARLRVSPPALSQSIRQLEARVGVRLLNRTTRSVSATAAGDALFSRLAVAFGELES
AIADVHAARDRPAGSLRINVPRVAAMRFIAPILGDFQRAYPDIALTVIVDDTLADIVEGRFDAGIRLGERLEKDMVAVKL
SEDLQMAAVAAPAYLENRAIPRHPQELHQHQCIKFEWPGGGNLYRWEFARGRRALEIAIEGSLTVNDTELMLNAVLDGVG
IAYMFEYQVRPWIEQGRLVRFLEAWSPSFPGFYLYHPSSRHVPPALRAFIDFMRARRAVNSE

Specific function: May have a role in the regulation of oprD expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=39.4648829431438, Blast_Score=241, Evalue=3e-65,
Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=39.8648648648649, Blast_Score=237, Evalue=9e-64,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=31.7073170731707, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=28.3737024221453, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI145693193, Length=285, Percent_Identity=28.4210526315789, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1789639, Length=283, Percent_Identity=25.0883392226148, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=28.0405405405405, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1786448, Length=287, Percent_Identity=27.5261324041812, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788706, Length=308, Percent_Identity=23.3766233766234, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI157672245, Length=137, Percent_Identity=39.4160583941606, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787879, Length=145, Percent_Identity=38.6206896551724, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789173, Length=295, Percent_Identity=25.0847457627119, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788748, Length=145, Percent_Identity=33.7931034482759, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI145693105, Length=148, Percent_Identity=25, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790011, Length=267, Percent_Identity=24.3445692883895, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790783, Length=245, Percent_Identity=23.6734693877551, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33660; Mature: 33660

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGSEFTELKAFSAIVEEGSFVRAAARLRVSPPALSQSIRQLEARVGVRLLNRTTRSVSA
CCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAAGDALFSRLAVAFGELESAIADVHAARDRPAGSLRINVPRVAAMRFIAPILGDFQRAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHC
PDIALTVIVDDTLADIVEGRFDAGIRLGERLEKDMVAVKLSEDLQMAAVAAPAYLENRAI
CCEEEEEEECHHHHHHHCCHHHCCHHHHHHHHHHHEEEEECCCHHHHHHHCCHHHHCCCC
PRHPQELHQHQCIKFEWPGGGNLYRWEFARGRRALEIAIEGSLTVNDTELMLNAVLDGVG
CCCHHHHHHCCCEEEECCCCCCEEEEEHHCCCEEEEEEEECCEEECHHHHHHHHHHHHCC
IAYMFEYQVRPWIEQGRLVRFLEAWSPSFPGFYLYHPSSRHVPPALRAFIDFMRARRAVN
EEEEEEECCCCHHHHCHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCC
SE
CC
>Mature Secondary Structure
MRGSEFTELKAFSAIVEEGSFVRAAARLRVSPPALSQSIRQLEARVGVRLLNRTTRSVSA
CCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAAGDALFSRLAVAFGELESAIADVHAARDRPAGSLRINVPRVAAMRFIAPILGDFQRAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHC
PDIALTVIVDDTLADIVEGRFDAGIRLGERLEKDMVAVKLSEDLQMAAVAAPAYLENRAI
CCEEEEEEECHHHHHHHCCHHHCCHHHHHHHHHHHEEEEECCCHHHHHHHCCHHHHCCCC
PRHPQELHQHQCIKFEWPGGGNLYRWEFARGRRALEIAIEGSLTVNDTELMLNAVLDGVG
CCCHHHHHHCCCEEEECCCCCCEEEEEHHCCCEEEEEEEECCEEECHHHHHHHHHHHHCC
IAYMFEYQVRPWIEQGRLVRFLEAWSPSFPGFYLYHPSSRHVPPALRAFIDFMRARRAVN
EEEEEEECCCCHHHHCHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCC
SE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043; 1427017 [H]