| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is gcd [H]
Identifier: 13471506
GI number: 13471506
Start: 1242569
End: 1244926
Strand: Reverse
Name: gcd [H]
Synonym: mll1500
Alternate gene names: 13471506
Gene position: 1244926-1242569 (Counterclockwise)
Preceding gene: 13471510
Following gene: 13471503
Centisome position: 17.69
GC content: 66.33
Gene sequence:
>2358_bases ATGGCCGCGCGAGCGCGCAACAGTCGAAGGAGTATCATCTTGGCTGTCACCATCACCTCCTTCGTTCTCTTTCTCCTCGG TCTGGCGCTTGGTGGCGGTGGCATCTGGCTGGCTTCGCTGGGGGGCAGTTGGTACTACATCGTCGTCGGCCTCGCCTTCC TGATCGCCGCCTGGCTGCTCTACCGGCGCCGTTCCACGGCGCTCTGGCTCTATGCGGCGATTGTGCTCGGCACGCTGGCC TGGGCGGTCTGGGAAATCGGCTTCGACTGGTGGGAGCTCGGCCCGCGCGGCGGCATCATCGTGCTGGTCGGGCTGTGGCT GCTGACGCCGTGGGCAAGGCGGGGCCTTGCCGGGCCTGACGGGCGCGCGCCGCTGATCCTGGCCGTGCTGGCATCGCTGG CGGTGGCCGGCTATTCGATGACCGCCGACCCGAAAGGCATTGACGGCGCGCTCGACACCGACAAGGTGATTCCCAAAGCC AATCTGGGTAATGATGTGCCGGCTGGCGAGTGGCACTATTACGGACGCACGCAGTTTGGCCAACGCTATTCGCCGCTCGA CCAGATCACGCCGGACAATGTCGCCAATCTGCAGCCGGCATGGACCTATCGCACCGGCGATGTGAAGGGGCCCGACGACA TCGGCGAGACCACCTATCAGGTGACGCCGCTGAAGATCGGCGACACGCTCTACATCTGCACGCCGCATAATTTCGCCATC GCGGTGGACGCCGCGACCGGAAAGGAAAAATGGCGCTACGATCCCAAGATCAAGCTCGACAAGGACCGCCAGCACCAGAC CTGCCGCGGCGTGTCCTACTATGCCGATACCGCCATCGCCGCCGGCCAGCCCTGCGCGACCCGCATCTACCTGCCGACCT CGGATGCGCGGCTGATCGCGCTCGACGCCGCCAGCGGTCAGGTCTGTCCGGCCTTCGCCGAGGGCGGCACGCTGAACCTT CTGACCAACATGCCCTATCCGAAATCGGGCTACTACTATTCGACCTCGGCGCCGCTGATATCAGGCAGCAAGATCATCGT CGGCGGCGCGGTCAACGACAACTATTCGACGCAGGAGCCGTCGGGGGTCATCCGCGCCTATGATGTCGGCACCGGCGCCC TGGTGTGGAAGTGGGATTCCGGCAACCCGGACCAGACGACGCCGCTGGCGGCGGGCCAGACCTATACCGCCAACTCGCCC AACATGTGGTCGACGCCGAGCGCCGACGAGAAGCTTGGGCTGCTCTATGTGCCACTCGGCAACCAGACGCCGGACCAGCT CGGCGCCGGGCGTAGCGCCAATGTCGAGAAATTCTCCTCCTCGATCGCCGCGCTCGACCTCAACACCGGGCAGTTGCGCT GGGTGCGGCAGACCGTGCACCATGACCTCTGGGACATGGACGTGCCGGCGCAGCCGAGCCTGATTGACATCACCAAGGCC GACGGCACAGTGGTGCCGGCGCTGGTCGGGCCGACCAAGCAGGGCGACCTCTATGTGCTTGACCGGCGCACCGGCGAACC GCTTGTTGCAGTCAAGGAAGTGCCGGCGCCCGGCGGCGCCGTCGAGGGCGATCACACGTCGCCGACGCAACCGGTGTCGG ATCTCTCCTTCAGCCCGAAGCCGCTGACGGATGCCGACATGTGGGGCATCACCATGTTCGACCAGATGGCCTGCAGGATT GCCTTCCACAAGCTGCGCTACGAAGGCCGTTACACGCCGCCGTCGGTGCAGGGATCGCTGATCTACCCCGGCAATTTCGG AGTCTTCAACTGGGGCGGGGTGGCAGTCGATCCGGTGCGGCAGGTGATGTTCGGCATGCCGACCTATCTGGCGTTTACGT CGAGACTCGTGCCCCGCGCGGACGTACCGCCGCCGGGCGATGACACCAAGGGCAGCGAGCAGGGGCTGAACCGCAACGAG GGCGCGCCCTACGCAGTGGTGATGGGGCCGTTCCTGTCGCCTCTCGGCATTCCCTGCCAGGCGCCACCCTGGGGTTATGT CGCGGGCGCGGATCTGCGGACCGGCACCATCGCCTACAAGCATCGCAACGGTACCGTCTACGATATGACGCCGCTGCCGC TGCCGCTGAAGGTCGGCGTGCCGGGCATTGGCGGGCCGATCATCACTGCCGGCGGCGTCGCCTTCCTGGGTGCCGCGGTC GACAACTATCTGCGCGCCTATGACCTGACGTCGGGCCGGCAACTCTGGCAGGCCAGGCTGCCCGCCGGCGGCCAGTCGAC GCCGATGACCTATACGGTCGCCGACGGGCGCCAGTTCGTGGTCATCGTCGCCGGCGGCCACGGCTCGGTCGGCACCAAGC CGGGGGATTATGTGATGGCTTACGCGCTGCCGAAATAG
Upstream 100 bases:
>100_bases CAAGCAAGATGGATTGCCACCTTGGCGTGTGGGCAGCTTGACAGGCGGGGCAGGCGGGAGAAAGCTGTGCGCAGGGCAGG AGCGATGCGCCGGGTTGCCC
Downstream 100 bases:
>100_bases CCGTGTCGCGCTAGCCAGAAGCGGTCCTGGCGCAAGATCAGTTCACCGTTTCACGGAAACGGCGAACTGCTCTAGTCCCA AGGGAAAGCGCTGCGCGCTT
Product: glucose dehydrogenase
Products: NA
Alternate protein names: Glucose dehydrogenase [pyrroloquinoline-quinone] [H]
Number of amino acids: Translated: 785; Mature: 784
Protein sequence:
>785_residues MAARARNSRRSIILAVTITSFVLFLLGLALGGGGIWLASLGGSWYYIVVGLAFLIAAWLLYRRRSTALWLYAAIVLGTLA WAVWEIGFDWWELGPRGGIIVLVGLWLLTPWARRGLAGPDGRAPLILAVLASLAVAGYSMTADPKGIDGALDTDKVIPKA NLGNDVPAGEWHYYGRTQFGQRYSPLDQITPDNVANLQPAWTYRTGDVKGPDDIGETTYQVTPLKIGDTLYICTPHNFAI AVDAATGKEKWRYDPKIKLDKDRQHQTCRGVSYYADTAIAAGQPCATRIYLPTSDARLIALDAASGQVCPAFAEGGTLNL LTNMPYPKSGYYYSTSAPLISGSKIIVGGAVNDNYSTQEPSGVIRAYDVGTGALVWKWDSGNPDQTTPLAAGQTYTANSP NMWSTPSADEKLGLLYVPLGNQTPDQLGAGRSANVEKFSSSIAALDLNTGQLRWVRQTVHHDLWDMDVPAQPSLIDITKA DGTVVPALVGPTKQGDLYVLDRRTGEPLVAVKEVPAPGGAVEGDHTSPTQPVSDLSFSPKPLTDADMWGITMFDQMACRI AFHKLRYEGRYTPPSVQGSLIYPGNFGVFNWGGVAVDPVRQVMFGMPTYLAFTSRLVPRADVPPPGDDTKGSEQGLNRNE GAPYAVVMGPFLSPLGIPCQAPPWGYVAGADLRTGTIAYKHRNGTVYDMTPLPLPLKVGVPGIGGPIITAGGVAFLGAAV DNYLRAYDLTSGRQLWQARLPAGGQSTPMTYTVADGRQFVVIVAGGHGSVGTKPGDYVMAYALPK
Sequences:
>Translated_785_residues MAARARNSRRSIILAVTITSFVLFLLGLALGGGGIWLASLGGSWYYIVVGLAFLIAAWLLYRRRSTALWLYAAIVLGTLA WAVWEIGFDWWELGPRGGIIVLVGLWLLTPWARRGLAGPDGRAPLILAVLASLAVAGYSMTADPKGIDGALDTDKVIPKA NLGNDVPAGEWHYYGRTQFGQRYSPLDQITPDNVANLQPAWTYRTGDVKGPDDIGETTYQVTPLKIGDTLYICTPHNFAI AVDAATGKEKWRYDPKIKLDKDRQHQTCRGVSYYADTAIAAGQPCATRIYLPTSDARLIALDAASGQVCPAFAEGGTLNL LTNMPYPKSGYYYSTSAPLISGSKIIVGGAVNDNYSTQEPSGVIRAYDVGTGALVWKWDSGNPDQTTPLAAGQTYTANSP NMWSTPSADEKLGLLYVPLGNQTPDQLGAGRSANVEKFSSSIAALDLNTGQLRWVRQTVHHDLWDMDVPAQPSLIDITKA DGTVVPALVGPTKQGDLYVLDRRTGEPLVAVKEVPAPGGAVEGDHTSPTQPVSDLSFSPKPLTDADMWGITMFDQMACRI AFHKLRYEGRYTPPSVQGSLIYPGNFGVFNWGGVAVDPVRQVMFGMPTYLAFTSRLVPRADVPPPGDDTKGSEQGLNRNE GAPYAVVMGPFLSPLGIPCQAPPWGYVAGADLRTGTIAYKHRNGTVYDMTPLPLPLKVGVPGIGGPIITAGGVAFLGAAV DNYLRAYDLTSGRQLWQARLPAGGQSTPMTYTVADGRQFVVIVAGGHGSVGTKPGDYVMAYALPK >Mature_784_residues AARARNSRRSIILAVTITSFVLFLLGLALGGGGIWLASLGGSWYYIVVGLAFLIAAWLLYRRRSTALWLYAAIVLGTLAW AVWEIGFDWWELGPRGGIIVLVGLWLLTPWARRGLAGPDGRAPLILAVLASLAVAGYSMTADPKGIDGALDTDKVIPKAN LGNDVPAGEWHYYGRTQFGQRYSPLDQITPDNVANLQPAWTYRTGDVKGPDDIGETTYQVTPLKIGDTLYICTPHNFAIA VDAATGKEKWRYDPKIKLDKDRQHQTCRGVSYYADTAIAAGQPCATRIYLPTSDARLIALDAASGQVCPAFAEGGTLNLL TNMPYPKSGYYYSTSAPLISGSKIIVGGAVNDNYSTQEPSGVIRAYDVGTGALVWKWDSGNPDQTTPLAAGQTYTANSPN MWSTPSADEKLGLLYVPLGNQTPDQLGAGRSANVEKFSSSIAALDLNTGQLRWVRQTVHHDLWDMDVPAQPSLIDITKAD GTVVPALVGPTKQGDLYVLDRRTGEPLVAVKEVPAPGGAVEGDHTSPTQPVSDLSFSPKPLTDADMWGITMFDQMACRIA FHKLRYEGRYTPPSVQGSLIYPGNFGVFNWGGVAVDPVRQVMFGMPTYLAFTSRLVPRADVPPPGDDTKGSEQGLNRNEG APYAVVMGPFLSPLGIPCQAPPWGYVAGADLRTGTIAYKHRNGTVYDMTPLPLPLKVGVPGIGGPIITAGGVAFLGAAVD NYLRAYDLTSGRQLWQARLPAGGQSTPMTYTVADGRQFVVIVAGGHGSVGTKPGDYVMAYALPK
Specific function: GDH is probably involved in energy conservation rather than in sugar metabolism [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=799, Percent_Identity=50.6883604505632, Blast_Score=761, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017511 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.5.2 [H]
Molecular weight: Translated: 84085; Mature: 83953
Theoretical pI: Translated: 7.24; Mature: 7.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAARARNSRRSIILAVTITSFVLFLLGLALGGGGIWLASLGGSWYYIVVGLAFLIAAWLL CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHH YRRRSTALWLYAAIVLGTLAWAVWEIGFDWWELGPRGGIIVLVGLWLLTPWARRGLAGPD HHCCCCHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCEEEEEHHHHHCHHHHCCCCCCC GRAPLILAVLASLAVAGYSMTADPKGIDGALDTDKVIPKANLGNDVPAGEWHYYGRTQFG CCCHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC QRYSPLDQITPDNVANLQPAWTYRTGDVKGPDDIGETTYQVTPLKIGDTLYICTPHNFAI CCCCCHHHCCCCCCCCCCCCEEEECCCCCCCHHCCCCEEEEEEEEECCEEEEECCCCEEE AVDAATGKEKWRYDPKIKLDKDRQHQTCRGVSYYADTAIAAGQPCATRIYLPTSDARLIA EEECCCCCHHCCCCCCEEECCCCCCHHHCCCHHHHCCHHCCCCCCEEEEEEECCCCEEEE LDAASGQVCPAFAEGGTLNLLTNMPYPKSGYYYSTSAPLISGSKIIVGGAVNDNYSTQEP EECCCCCCCCHHCCCCEEEEEECCCCCCCCEEEECCCCEECCCEEEEEECCCCCCCCCCC SGVIRAYDVGTGALVWKWDSGNPDQTTPLAAGQTYTANSPNMWSTPSADEKLGLLYVPLG CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECC NQTPDQLGAGRSANVEKFSSSIAALDLNTGQLRWVRQTVHHDLWDMDVPAQPSLIDITKA CCCHHHHCCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC DGTVVPALVGPTKQGDLYVLDRRTGEPLVAVKEVPAPGGAVEGDHTSPTQPVSDLSFSPK CCEEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCC PLTDADMWGITMFDQMACRIAFHKLRYEGRYTPPSVQGSLIYPGNFGVFNWGGVAVDPVR CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEECCCEEHHHHH QVMFGMPTYLAFTSRLVPRADVPPPGDDTKGSEQGLNRNEGAPYAVVMGPFLSPLGIPCQ HHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEECCCCCCCCCCCC APPWGYVAGADLRTGTIAYKHRNGTVYDMTPLPLPLKVGVPGIGGPIITAGGVAFLGAAV CCCCCEEECCCCEECEEEEEECCCEEEECCCCCEEEEECCCCCCCCEEECCHHHHHHHHH DNYLRAYDLTSGRQLWQARLPAGGQSTPMTYTVADGRQFVVIVAGGHGSVGTKPGDYVMA HHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCEEEE YALPK EECCC >Mature Secondary Structure AARARNSRRSIILAVTITSFVLFLLGLALGGGGIWLASLGGSWYYIVVGLAFLIAAWLL CCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHH YRRRSTALWLYAAIVLGTLAWAVWEIGFDWWELGPRGGIIVLVGLWLLTPWARRGLAGPD HHCCCCHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCEEEEEHHHHHCHHHHCCCCCCC GRAPLILAVLASLAVAGYSMTADPKGIDGALDTDKVIPKANLGNDVPAGEWHYYGRTQFG CCCHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC QRYSPLDQITPDNVANLQPAWTYRTGDVKGPDDIGETTYQVTPLKIGDTLYICTPHNFAI CCCCCHHHCCCCCCCCCCCCEEEECCCCCCCHHCCCCEEEEEEEEECCEEEEECCCCEEE AVDAATGKEKWRYDPKIKLDKDRQHQTCRGVSYYADTAIAAGQPCATRIYLPTSDARLIA EEECCCCCHHCCCCCCEEECCCCCCHHHCCCHHHHCCHHCCCCCCEEEEEEECCCCEEEE LDAASGQVCPAFAEGGTLNLLTNMPYPKSGYYYSTSAPLISGSKIIVGGAVNDNYSTQEP EECCCCCCCCHHCCCCEEEEEECCCCCCCCEEEECCCCEECCCEEEEEECCCCCCCCCCC SGVIRAYDVGTGALVWKWDSGNPDQTTPLAAGQTYTANSPNMWSTPSADEKLGLLYVPLG CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECC NQTPDQLGAGRSANVEKFSSSIAALDLNTGQLRWVRQTVHHDLWDMDVPAQPSLIDITKA CCCHHHHCCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC DGTVVPALVGPTKQGDLYVLDRRTGEPLVAVKEVPAPGGAVEGDHTSPTQPVSDLSFSPK CCEEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCC PLTDADMWGITMFDQMACRIAFHKLRYEGRYTPPSVQGSLIYPGNFGVFNWGGVAVDPVR CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEECCCEEHHHHH QVMFGMPTYLAFTSRLVPRADVPPPGDDTKGSEQGLNRNEGAPYAVVMGPFLSPLGIPCQ HHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEECCCCCCCCCCCC APPWGYVAGADLRTGTIAYKHRNGTVYDMTPLPLPLKVGVPGIGGPIITAGGVAFLGAAV CCCCCEEECCCCEECEEEEEECCCEEEECCCCCEEEEECCCCCCCCEEECCHHHHHHHHH DNYLRAYDLTSGRQLWQARLPAGGQSTPMTYTVADGRQFVVIVAGGHGSVGTKPGDYVMA HHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCEEEE YALPK EECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2228962; 8419307; 8202364; 9278503; 8509415; 8554505 [H]