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The map label for this gene is scpB [H]

Identifier: 13471184

GI number: 13471184

Start: 908014

End: 908778

Strand: Reverse

Name: scpB [H]

Synonym: mll1087

Alternate gene names: 13471184

Gene position: 908778-908014 (Counterclockwise)

Preceding gene: 13471185

Following gene: 13471183

Centisome position: 12.92

GC content: 65.49

Gene sequence:

>765_bases
ATGAGCGAACGCGCCAACGCTTCGGTTATCCCCTTCAAGGTGGACGATGAACTGGAAGGCGATCTCGACCAGACTTCGGC
CGAGAATCCGGTGCAGAACCCGGCCGAGCGGCTGCATATTGCGGAAGCCGTGCGCATGGCAGAGGCGATCGTGTTCGCCA
GCACCGAACCCGTCAGCGAAAAGCAGCTTGCCGCACGCCTTCCCGACGGCATCAATGTCGCCCTTGCCATGGCCGAGCTG
CAGCAGGTCTATTCCCGGCGCGGCGTCAATCTGGTGCGGGTCGGCGACGCTTGGGCTTTCCGCACCGCCGGCGATCTCGC
CTTCCTGATGAGCCGCGACACGGTGCAGCAGCGCAAGCTGTCGCGCGCTGCGCTCGAAGTGCTGGCGATCATCGCCTATC
ACCAGCCGGTGACGCGCGCCGAGATCGAGGATATCCGCGGTGTCGAGACGTCGAAGGGCACGCTGGACACGCTGCTCGAG
ACGGAATGGGTGCGCATGCGCGGCCGCCGCAAGACGCCCGGCCGTCCCGTCACCTACGGCACCACGGAAACCTTCCTCGA
CCATTTCGCGCTCGAGGAAATCCGCGATCTTCCCGGCATGGAAGAACTGAAGGGGGCGGGCCTGCTCTCGGGCCGCATGC
CGTCGAATTTCTCCATCCCGCAGCCGCCGGCCGACCCCGACCTGCTGACCGAGGACGAGGATCCGCTGACCGACATCGAT
CTGGAGGAACTCGGCTTGCTGACGCCGCGCGTCACGGAAGATTGA

Upstream 100 bases:

>100_bases
TGCGCGAGCGCAAGATGGATCTGCGCCAGGACGAGGTGTTCGCGCCGATCTATCTGCGCGATCACCGCGCACCGGCAATC
AAGGCAGTCGAGGTGGCATC

Downstream 100 bases:

>100_bases
CCGCTGGCGCTCTGTCCAACTGCGCCGGTAGATCGTAGATGCGCCGATTGGTAGCGGGCCAGCGAGTCGAAAAAGCGTGA
CATCCGTCACCCTTTCATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MSERANASVIPFKVDDELEGDLDQTSAENPVQNPAERLHIAEAVRMAEAIVFASTEPVSEKQLAARLPDGINVALAMAEL
QQVYSRRGVNLVRVGDAWAFRTAGDLAFLMSRDTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLE
TEWVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEELKGAGLLSGRMPSNFSIPQPPADPDLLTEDEDPLTDID
LEELGLLTPRVTED

Sequences:

>Translated_254_residues
MSERANASVIPFKVDDELEGDLDQTSAENPVQNPAERLHIAEAVRMAEAIVFASTEPVSEKQLAARLPDGINVALAMAEL
QQVYSRRGVNLVRVGDAWAFRTAGDLAFLMSRDTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLE
TEWVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEELKGAGLLSGRMPSNFSIPQPPADPDLLTEDEDPLTDID
LEELGLLTPRVTED
>Mature_253_residues
SERANASVIPFKVDDELEGDLDQTSAENPVQNPAERLHIAEAVRMAEAIVFASTEPVSEKQLAARLPDGINVALAMAELQ
QVYSRRGVNLVRVGDAWAFRTAGDLAFLMSRDTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLET
EWVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEELKGAGLLSGRMPSNFSIPQPPADPDLLTEDEDPLTDIDL
EELGLLTPRVTED

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 28104; Mature: 27973

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERANASVIPFKVDDELEGDLDQTSAENPVQNPAERLHIAEAVRMAEAIVFASTEPVSE
CCCCCCCCEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
KQLAARLPDGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAGDLAFLMSRDTVQQRKL
HHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHH
SRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETEWVRMRGRRKTPGRPVTYG
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECC
TTETFLDHFALEEIRDLPGMEELKGAGLLSGRMPSNFSIPQPPADPDLLTEDEDPLTDID
CHHHHHHHHHHHHHHHCCCHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LEELGLLTPRVTED
HHHHCCCCCCCCCC
>Mature Secondary Structure 
SERANASVIPFKVDDELEGDLDQTSAENPVQNPAERLHIAEAVRMAEAIVFASTEPVSE
CCCCCCCEEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
KQLAARLPDGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAGDLAFLMSRDTVQQRKL
HHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHHH
SRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETEWVRMRGRRKTPGRPVTYG
HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECC
TTETFLDHFALEEIRDLPGMEELKGAGLLSGRMPSNFSIPQPPADPDLLTEDEDPLTDID
CHHHHHHHHHHHHHHHCCCHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LEELGLLTPRVTED
HHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]