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The map label for this gene is yliC [C]

Identifier: 13470800

GI number: 13470800

Start: 463233

End: 464204

Strand: Reverse

Name: yliC [C]

Synonym: mll0597

Alternate gene names: 13470800

Gene position: 464204-463233 (Counterclockwise)

Preceding gene: 13470801

Following gene: 13470799

Centisome position: 6.6

GC content: 61.42

Gene sequence:

>972_bases
ATGTTTTATGCCATCCTGCGCCGTTTCGGTCAGATGCTGTTCGTGATGTTCGGCATCTCGGTCATCGTCTTCCTGATCTT
CTTCGCGACGCCGGGCGCTGACCCGGCGGCGCGCATCGCCGGCCGCAATGCATCGCCCGAAGTGCTGGAAGCCGTGCGCC
ACAGTTTCGGCTTCGACCGGCCACTCTACGTGCAATATGTGAAGATGATGGAGAAGATCTTCGTCACCGGCGACCTGACC
TCCTTCGTCAATCGCGGCTGGAAGGTGGTGCCGGCGGTGATGGATTCCATTCCCGTTACGCTTTCGCTGGTGTTCGGGGC
GGCGATCCTGTGGGTGGTTGTCTCCATCATCATCGGTATCGTTGCCGCCGCCACCCGCGACAGCTGGCTGGACAAGCTGC
TGATGGCGCTGGGGCTGCTTGGCATCTCCATGCCGGTCTACTGGCTGGGCGAGGTGATGAACCTGATCACCCAGAGCCGC
TACCACGACAGCTGGGCGTTCTCCTGGGTGCCGCCGCTCGGCTATAAGAATTTCTCCGACGATCCCAAAGGCTGGTTCCT
GACCCTGGTCATTCCGTGGATCACGTTGGCCATTCTCTACATCGGCATCTACGGGCGCGTGCTGCGTGCCGCCATCATCG
AATCCCTGCAGGAAGACTTTATCCGCACGGCCCGCGCCAAGGGCCTGTCGGAGACGCGCATCTTGCTGCGCCACGCCTTG
CGCACATCGCTCATCGCCTTCGTCACCTTGTTCGGTCTCGACTTCGGCGCGCTGGTGGGCGGCTCGGCCCTTTTGACCGA
GGTGGTGTTCGGGCTGCACGGCATCGGCAAGCTCACCTATGACGCGCTGCAGAACCTCGACCTGCCGATGATCATGGCGA
CGGTGATGTATGCGTCCATGTTCGTGGTCATCGCCAATGCGGTCGTCGACTTCGTCTACATCCTGCTCGATCCGCGCCTG
AGGACATCATGA

Upstream 100 bases:

>100_bases
GCCTGGCGATCGCAGTGTCCGTCATGGCGCTCAATGTCTTCGGCGACGGGCTGCGCGACGCGCTCGACCCGCGCTCCAAG
GTTCGGCTGGGGCGCGACTG

Downstream 100 bases:

>100_bases
TACTGTCGGTGCGCGACCTCAAAGTATCCTTCCGCACCAATGACGGTCTGGTGCGGGCCATCGACGGCGTTTCCTTCGAC
CTCGAGGAAAGTGAGATACT

Product: permease of oligopeptide ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MFYAILRRFGQMLFVMFGISVIVFLIFFATPGADPAARIAGRNASPEVLEAVRHSFGFDRPLYVQYVKMMEKIFVTGDLT
SFVNRGWKVVPAVMDSIPVTLSLVFGAAILWVVVSIIIGIVAAATRDSWLDKLLMALGLLGISMPVYWLGEVMNLITQSR
YHDSWAFSWVPPLGYKNFSDDPKGWFLTLVIPWITLAILYIGIYGRVLRAAIIESLQEDFIRTARAKGLSETRILLRHAL
RTSLIAFVTLFGLDFGALVGGSALLTEVVFGLHGIGKLTYDALQNLDLPMIMATVMYASMFVVIANAVVDFVYILLDPRL
RTS

Sequences:

>Translated_323_residues
MFYAILRRFGQMLFVMFGISVIVFLIFFATPGADPAARIAGRNASPEVLEAVRHSFGFDRPLYVQYVKMMEKIFVTGDLT
SFVNRGWKVVPAVMDSIPVTLSLVFGAAILWVVVSIIIGIVAAATRDSWLDKLLMALGLLGISMPVYWLGEVMNLITQSR
YHDSWAFSWVPPLGYKNFSDDPKGWFLTLVIPWITLAILYIGIYGRVLRAAIIESLQEDFIRTARAKGLSETRILLRHAL
RTSLIAFVTLFGLDFGALVGGSALLTEVVFGLHGIGKLTYDALQNLDLPMIMATVMYASMFVVIANAVVDFVYILLDPRL
RTS
>Mature_323_residues
MFYAILRRFGQMLFVMFGISVIVFLIFFATPGADPAARIAGRNASPEVLEAVRHSFGFDRPLYVQYVKMMEKIFVTGDLT
SFVNRGWKVVPAVMDSIPVTLSLVFGAAILWVVVSIIIGIVAAATRDSWLDKLLMALGLLGISMPVYWLGEVMNLITQSR
YHDSWAFSWVPPLGYKNFSDDPKGWFLTLVIPWITLAILYIGIYGRVLRAAIIESLQEDFIRTARAKGLSETRILLRHAL
RTSLIAFVTLFGLDFGALVGGSALLTEVVFGLHGIGKLTYDALQNLDLPMIMATVMYASMFVVIANAVVDFVYILLDPRL
RTS

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=322, Percent_Identity=34.1614906832298, Blast_Score=167, Evalue=9e-43,
Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=30.6784660766962, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1787761, Length=338, Percent_Identity=36.094674556213, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI1789888, Length=324, Percent_Identity=30.5555555555556, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=28.5714285714286, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1788504, Length=288, Percent_Identity=27.7777777777778, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787550, Length=259, Percent_Identity=27.4131274131274, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35945; Mature: 35945

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]