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The map label for this gene is ygaD [H]

Identifier: 13470628

GI number: 13470628

Start: 279044

End: 279547

Strand: Reverse

Name: ygaD [H]

Synonym: mll0394

Alternate gene names: 13470628

Gene position: 279547-279044 (Counterclockwise)

Preceding gene: 13470629

Following gene: 13470617

Centisome position: 3.97

GC content: 65.67

Gene sequence:

>504_bases
ATGAGCAACGCCGAACTCGCAAACTCCCTGCTGCTGGCCTGCCAGCAACGCGGCATCATGCTGGCGACGGCTGAAAGCTG
CACCGGCGGCCTGATCATCGCCGCGCTCACCGACATTGCCGGCTCCTCGGCGGTGGTCGACCGCGGCTTTATCACCTATT
CCAACGAAGCCAAGATGGACATGCTCGGCGTTGCCGCCAAAACGCTCGACGCGCATGGAGCCGTTTCGCGCGAAACGGTC
CTGGAGATGGCGGCCGGCGCGCTGGCGCATTCGCGCGCGAGCCTTTCTCTTGCCGTTACCGGCATTGCCGGCCCAAGCGG
AGGTTCGGCTGACAAGCCGGTCGGTCTCGTCTGGTTCGGCCTTGCCCTGGCCGGCCAGCCTGTTGTCGCCGAGCGCCAGC
TGTTTGGCCACAAGGGCCGCGAATTCATCCGCCACGAGACGGTGAGACACGCGCTGCAATTCGGCCTGCGCGCGCTTGGA
CAAGGCACGGATTCACCGCGATAG

Upstream 100 bases:

>100_bases
TCAAGGCGACAACCAACGAAAAACTCGGCTTCGTCGGCCGCGAGGAAGGCATTGCGGCGATCGCCACCGCCAGCGTGGTG
TTCCCCGGCGAGGTGCCGGA

Downstream 100 bases:

>100_bases
CGTCATGCCGGCGCAACCCCATAGATGACGTCGGCGCGCTTTTCGAAAGCCTCGGCGAACATCCGGAAGGCACGGTCGAA
CATGGTGCCCATCAGCGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MSNAELANSLLLACQQRGIMLATAESCTGGLIIAALTDIAGSSAVVDRGFITYSNEAKMDMLGVAAKTLDAHGAVSRETV
LEMAAGALAHSRASLSLAVTGIAGPSGGSADKPVGLVWFGLALAGQPVVAERQLFGHKGREFIRHETVRHALQFGLRALG
QGTDSPR

Sequences:

>Translated_167_residues
MSNAELANSLLLACQQRGIMLATAESCTGGLIIAALTDIAGSSAVVDRGFITYSNEAKMDMLGVAAKTLDAHGAVSRETV
LEMAAGALAHSRASLSLAVTGIAGPSGGSADKPVGLVWFGLALAGQPVVAERQLFGHKGREFIRHETVRHALQFGLRALG
QGTDSPR
>Mature_166_residues
SNAELANSLLLACQQRGIMLATAESCTGGLIIAALTDIAGSSAVVDRGFITYSNEAKMDMLGVAAKTLDAHGAVSRETVL
EMAAGALAHSRASLSLAVTGIAGPSGGSADKPVGLVWFGLALAGQPVVAERQLFGHKGREFIRHETVRHALQFGLRALGQ
GTDSPR

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=149, Percent_Identity=48.993288590604, Blast_Score=143, Evalue=5e-36,
Organism=Escherichia coli, GI1787818, Length=120, Percent_Identity=40.8333333333333, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 17197; Mature: 17066

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNAELANSLLLACQQRGIMLATAESCTGGLIIAALTDIAGSSAVVDRGFITYSNEAKMD
CCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEHHHHCCCCCCEEECCEEEECCCCCHH
MLGVAAKTLDAHGAVSRETVLEMAAGALAHSRASLSLAVTGIAGPSGGSADKPVGLVWFG
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHH
LALAGQPVVAERQLFGHKGREFIRHETVRHALQFGLRALGQGTDSPR
HHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SNAELANSLLLACQQRGIMLATAESCTGGLIIAALTDIAGSSAVVDRGFITYSNEAKMD
CCHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEHHHHCCCCCCEEECCEEEECCCCCHH
MLGVAAKTLDAHGAVSRETVLEMAAGALAHSRASLSLAVTGIAGPSGGSADKPVGLVWFG
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHH
LALAGQPVVAERQLFGHKGREFIRHETVRHALQFGLRALGQGTDSPR
HHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]