BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is ucpA [C]

Identifier: 13470596

GI number: 13470596

Start: 248555

End: 249376

Strand: Reverse

Name: ucpA [C]

Synonym: mll0352

Alternate gene names: 13470596

Gene position: 249376-248555 (Counterclockwise)

Preceding gene: 13470603

Following gene: 13470595

Centisome position: 3.54

GC content: 60.83

Gene sequence:

>822_bases
ATGACACTCTATCGGGCCGATCCGAAACACGGCGTCGCCTGGGTCACGGGCGGCAGCAGCGGCATTGGCCGCTCGCTGGC
CAGGGATCTGGCGTCCCAGGGCTATGCGGTGGCGGTAACGGCACTGGACGATGATCCGATCGACACGCTCATCGTCGAGA
CCGCGCAGATGCCGGGCAGCGTCACGGCCTTTCCCTGCGACGTCACGGACGAGCCGCGCATGGCAAGAACGGTGGCCGCG
ATCGAGAAGGAGCTCGGCCCTATCGTGCTCGCCGTCTTCAATGCCGGAAACTACATTTCGACGCCTGGAGAAGCCCTCGT
CGTCAAGGACTTTCGCCGCACTTTCGAAGTTAATTATTTCGGCATCATCAACGGCTTGGTGCCGGTCGTTGAGTATATGC
GCGTGCGATCGCGCGGCCATGTCGTGCTGGTCGGATCGGTTACCGCCTATTTCGGCTGGCCAACCACTGCCGCCTATGGC
GGCACCAAGGCGGCGATCAACATCCTGGCCGAGTCGCTGAAGTATGATTTCGACAAGATGAACATCCGCGTCCAGGTGAT
AAACCCCGGCTTTGTCGACACGCCGCTGACCGAAAAGAACATGCTGCCGATGCCGGGCCTGATGCCCGTCACCCGCGCGA
CGCGCCGCATGATCAAGGCAATCAAATCTGGCGGCTTCGAAGTCACCTTTCCTTACCGAACGAGCTGGCCGCTGAAATTT
CTCGCTTTGTTGCCCAGGCCGATAAGCCGATGGGTGATCAGCTTGATGACCAGCTGGAAGGCACGGCCGCTGCATTACGA
GCGCAAGCCACCCAACGAATAG

Upstream 100 bases:

>100_bases
GATATCGCACGGTTCATTTTCATCTGTGGTCGAAAAGCACTCTTTTCATTCGATTTCTTCACCGCTAGAGCAAGGCACCA
ACAACTCGGCAGGGCGCAAC

Downstream 100 bases:

>100_bases
GATGCCCACAGGATTTGGTGGTGTGACTGCCTGAACGGCCGTTGCCTGTTCATGGCCACCGCCATAGGCTTGTTGTTGTT
GCGTGGAGTCTGCGATGGGG

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MTLYRADPKHGVAWVTGGSSGIGRSLARDLASQGYAVAVTALDDDPIDTLIVETAQMPGSVTAFPCDVTDEPRMARTVAA
IEKELGPIVLAVFNAGNYISTPGEALVVKDFRRTFEVNYFGIINGLVPVVEYMRVRSRGHVVLVGSVTAYFGWPTTAAYG
GTKAAINILAESLKYDFDKMNIRVQVINPGFVDTPLTEKNMLPMPGLMPVTRATRRMIKAIKSGGFEVTFPYRTSWPLKF
LALLPRPISRWVISLMTSWKARPLHYERKPPNE

Sequences:

>Translated_273_residues
MTLYRADPKHGVAWVTGGSSGIGRSLARDLASQGYAVAVTALDDDPIDTLIVETAQMPGSVTAFPCDVTDEPRMARTVAA
IEKELGPIVLAVFNAGNYISTPGEALVVKDFRRTFEVNYFGIINGLVPVVEYMRVRSRGHVVLVGSVTAYFGWPTTAAYG
GTKAAINILAESLKYDFDKMNIRVQVINPGFVDTPLTEKNMLPMPGLMPVTRATRRMIKAIKSGGFEVTFPYRTSWPLKF
LALLPRPISRWVISLMTSWKARPLHYERKPPNE
>Mature_272_residues
TLYRADPKHGVAWVTGGSSGIGRSLARDLASQGYAVAVTALDDDPIDTLIVETAQMPGSVTAFPCDVTDEPRMARTVAAI
EKELGPIVLAVFNAGNYISTPGEALVVKDFRRTFEVNYFGIINGLVPVVEYMRVRSRGHVVLVGSVTAYFGWPTTAAYGG
TKAAINILAESLKYDFDKMNIRVQVINPGFVDTPLTEKNMLPMPGLMPVTRATRRMIKAIKSGGFEVTFPYRTSWPLKFL
ALLPRPISRWVISLMTSWKARPLHYERKPPNE

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4503817, Length=192, Percent_Identity=30.2083333333333, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40254992, Length=189, Percent_Identity=30.1587301587302, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI7657478, Length=207, Percent_Identity=28.9855072463768, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI119392083, Length=186, Percent_Identity=29.5698924731183, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI210032110, Length=246, Percent_Identity=24.390243902439, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI20149619, Length=200, Percent_Identity=27.5, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI4758504, Length=197, Percent_Identity=29.4416243654822, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI109715829, Length=198, Percent_Identity=28.2828282828283, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=26.1538461538462, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI223718074, Length=197, Percent_Identity=32.48730964467, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI150247226, Length=196, Percent_Identity=30.1020408163265, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI59889578, Length=163, Percent_Identity=30.6748466257669, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI40548397, Length=191, Percent_Identity=28.2722513089005, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI214010158, Length=191, Percent_Identity=28.2722513089005, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI214010156, Length=191, Percent_Identity=28.2722513089005, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI22758144, Length=191, Percent_Identity=28.2722513089005, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI32483357, Length=203, Percent_Identity=31.0344827586207, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87082100, Length=190, Percent_Identity=34.2105263157895, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI2367175, Length=194, Percent_Identity=30.9278350515464, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787905, Length=206, Percent_Identity=29.6116504854369, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1790717, Length=184, Percent_Identity=26.0869565217391, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=27.6595744680851, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789378, Length=193, Percent_Identity=29.0155440414508, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787820, Length=179, Percent_Identity=25.6983240223464, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=216, Percent_Identity=28.2407407407407, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI32563809, Length=198, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17507613, Length=198, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=250, Percent_Identity=24, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=199, Percent_Identity=29.1457286432161, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193210355, Length=187, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=191, Percent_Identity=25.130890052356, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=198, Percent_Identity=26.7676767676768, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=197, Percent_Identity=31.4720812182741, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=251, Percent_Identity=25.8964143426295, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=189, Percent_Identity=25.3968253968254, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=205, Percent_Identity=27.8048780487805, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI281364892, Length=245, Percent_Identity=26.1224489795918, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=31.9796954314721, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI17737361, Length=201, Percent_Identity=30.8457711442786, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24640492, Length=264, Percent_Identity=26.1363636363636, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24648944, Length=198, Percent_Identity=31.3131313131313, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24641232, Length=201, Percent_Identity=32.8358208955224, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI21356301, Length=248, Percent_Identity=28.6290322580645, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=29.3478260869565, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI21358495, Length=193, Percent_Identity=26.9430051813472, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355631, Length=275, Percent_Identity=25.4545454545455, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648693, Length=219, Percent_Identity=29.6803652968037, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21355889, Length=219, Percent_Identity=29.6803652968037, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24663911, Length=216, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24641388, Length=205, Percent_Identity=29.7560975609756, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24643142, Length=193, Percent_Identity=29.5336787564767, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30094; Mature: 29963

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLYRADPKHGVAWVTGGSSGIGRSLARDLASQGYAVAVTALDDDPIDTLIVETAQMPGS
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEEECCCCCHHHEEEHHCCCCC
VTAFPCDVTDEPRMARTVAAIEKELGPIVLAVFNAGNYISTPGEALVVKDFRRTFEVNYF
EEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCEEEEHHHHHHHCCCHH
GIINGLVPVVEYMRVRSRGHVVLVGSVTAYFGWPTTAAYGGTKAAINILAESLKYDFDKM
HHHHHHHHHHHHHHHHCCCCEEEEECEEEEECCCCHHHCCCHHHHHHHHHHHHHCCCCCE
NIRVQVINPGFVDTPLTEKNMLPMPGLMPVTRATRRMIKAIKSGGFEVTFPYRTSWPLKF
EEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
LALLPRPISRWVISLMTSWKARPLHYERKPPNE
HHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLYRADPKHGVAWVTGGSSGIGRSLARDLASQGYAVAVTALDDDPIDTLIVETAQMPGS
CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEEECCCCCHHHEEEHHCCCCC
VTAFPCDVTDEPRMARTVAAIEKELGPIVLAVFNAGNYISTPGEALVVKDFRRTFEVNYF
EEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCEEEEHHHHHHHCCCHH
GIINGLVPVVEYMRVRSRGHVVLVGSVTAYFGWPTTAAYGGTKAAINILAESLKYDFDKM
HHHHHHHHHHHHHHHHCCCCEEEEECEEEEECCCCHHHCCCHHHHHHHHHHHHHCCCCCE
NIRVQVINPGFVDTPLTEKNMLPMPGLMPVTRATRRMIKAIKSGGFEVTFPYRTSWPLKF
EEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
LALLPRPISRWVISLMTSWKARPLHYERKPPNE
HHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1730672 [H]