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The map label for this gene is rarA [H]

Identifier: 13470578

GI number: 13470578

Start: 225539

End: 226846

Strand: Direct

Name: rarA [H]

Synonym: mlr0329

Alternate gene names: 13470578

Gene position: 225539-226846 (Clockwise)

Preceding gene: 13470577

Following gene: 13470579

Centisome position: 3.21

GC content: 64.37

Gene sequence:

>1308_bases
ATGGCCGATCTGTTCAGTGTCGATGAACCGGAAAAGGCGCCGCCCGGGCGGCCGCTGGCCGACAGGCTGCGGCCGAAAAA
CCTTGGCGAGGTCGTCGGCCAGGAGCATCTGACCGGCCCCGATGGCGCCCTGACCCGGCTGATCGGCTCGGGCTCACTCG
GTTCGATGATTTTCTGGGGACCGCCGGGCACCGGCAAGACCACTGTGGCCAGGCTGCTCGCTGGCGAGACCAGCCTTGCC
TTCGAGCAGATCTCGGCGGTGTTTTCGGGCGTTGCCGACCTGAAGAAAGTGTTCGAGACGGCCAAGCTGCGCCGCGCCAA
CGGCCGCCAGACCCTGCTTTTCGTTGACGAGATCCACCGCTTCAACCGCGCCCAGCAGGATTCCTTTCTCCCTGTCATGG
AGGATGGGACGGTCGTCTTGGTCGGCGCCACGACCGAAAACCCGTCCTTCGAACTCAACGCGGCTCTGTTGTCCCGCGCG
CGCGTCATGGTTTTCCATTCGCTCGGCGAGGAGAGCATCGCCAAGCTGATGGTGCGGGCGGAGGAGACGGAGGGCAGGGC
GCTGCCGCTCGACGACGAGGCCCGCGCCATGCTGATCCGCATGAGCGATGGCGATGGACGCGCATCGCTGACACTCGCCG
AGGAAGTCTGGCGGGCCGCCAAACCTGGCGAGGTCTTCGATCCCGAGGGGTTGCAGCGCATCGTCCAGCGCCGCGCGCCG
ATCTACGACAAGGGCCAGGACGGCCACTACAATCTGATCTCGGCGCTCCACAAATCGGTGCGCGGCTCCGATCCCGATGC
AGCACTCTACTATCTCGCCCGCATGTTCGACGCCGGCGAGGATCCGCTCTATCTCGGCCGCCGGCTGGTGCGCATGGCGA
TGGAAGATATCGGCCTTGCCGATCCGCAGGCACTGGTCGTTGCCAATGCCGCCAAGGACGCCTACGACTACCTTGGCTCT
CCGGAAGGCGAACTCGCCTTTGCCGAAGCCACCGTCTATCTCGCCACCGCGCCCAAATCCAATGCCGTCTACACGGCCTT
CAAGGCGGCCACGCAGGCAGCCAAGCAGCATGGCTCGCTGCTGCCGCCAAAGCATATCCTCAACGCGCCGACCAAGCTGA
TGAAGGAAGAGGATTACGGCGCGGGCTATCGCTACGATCATGATGAGCCGGACGCCTTTTCGGGCCAGGACTATTTTCCG
GAGAAGATGGGCCGCCAGACCTTCTACGATCCGCCTGAGCGTGGTTTCGAGCGCGACATCAGGAAGCGGCTCGACTATTG
GGCGAAGCTGCGCAAGGAACGGGAATAG

Upstream 100 bases:

>100_bases
GGTGGCGCTTTACCGTCGAGCGCGGCGGGCAGATACTGCGCCAGGTGTTGCGTTACTGAGTTCGGTCTGAAGGGATCGCG
CTCCAAACCAAAAGAAGTGC

Downstream 100 bases:

>100_bases
CTGATTTGCGTGGCCCCGTGGTCGTCACGCTTCGCAGCGAGGCCTCGCCATGGGGCATCTCAACCTCGGTCGCTCTCCAT
GCACTACTGGCCGCGATGCT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MADLFSVDEPEKAPPGRPLADRLRPKNLGEVVGQEHLTGPDGALTRLIGSGSLGSMIFWGPPGTGKTTVARLLAGETSLA
FEQISAVFSGVADLKKVFETAKLRRANGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRA
RVMVFHSLGEESIAKLMVRAEETEGRALPLDDEARAMLIRMSDGDGRASLTLAEEVWRAAKPGEVFDPEGLQRIVQRRAP
IYDKGQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAMEDIGLADPQALVVANAAKDAYDYLGS
PEGELAFAEATVYLATAPKSNAVYTAFKAATQAAKQHGSLLPPKHILNAPTKLMKEEDYGAGYRYDHDEPDAFSGQDYFP
EKMGRQTFYDPPERGFERDIRKRLDYWAKLRKERE

Sequences:

>Translated_435_residues
MADLFSVDEPEKAPPGRPLADRLRPKNLGEVVGQEHLTGPDGALTRLIGSGSLGSMIFWGPPGTGKTTVARLLAGETSLA
FEQISAVFSGVADLKKVFETAKLRRANGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRA
RVMVFHSLGEESIAKLMVRAEETEGRALPLDDEARAMLIRMSDGDGRASLTLAEEVWRAAKPGEVFDPEGLQRIVQRRAP
IYDKGQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAMEDIGLADPQALVVANAAKDAYDYLGS
PEGELAFAEATVYLATAPKSNAVYTAFKAATQAAKQHGSLLPPKHILNAPTKLMKEEDYGAGYRYDHDEPDAFSGQDYFP
EKMGRQTFYDPPERGFERDIRKRLDYWAKLRKERE
>Mature_434_residues
ADLFSVDEPEKAPPGRPLADRLRPKNLGEVVGQEHLTGPDGALTRLIGSGSLGSMIFWGPPGTGKTTVARLLAGETSLAF
EQISAVFSGVADLKKVFETAKLRRANGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRAR
VMVFHSLGEESIAKLMVRAEETEGRALPLDDEARAMLIRMSDGDGRASLTLAEEVWRAAKPGEVFDPEGLQRIVQRRAPI
YDKGQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAMEDIGLADPQALVVANAAKDAYDYLGSP
EGELAFAEATVYLATAPKSNAVYTAFKAATQAAKQHGSLLPPKHILNAPTKLMKEEDYGAGYRYDHDEPDAFSGQDYFPE
KMGRQTFYDPPERGFERDIRKRLDYWAKLRKERE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=41.5909090909091, Blast_Score=327, Evalue=9e-90,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=37.7272727272727, Blast_Score=274, Evalue=9e-74,
Organism=Escherichia coli, GI1787119, Length=423, Percent_Identity=49.645390070922, Blast_Score=393, Evalue=1e-110,
Organism=Saccharomyces cerevisiae, GI6324111, Length=422, Percent_Identity=39.3364928909953, Blast_Score=294, Evalue=2e-80,
Organism=Saccharomyces cerevisiae, GI6324039, Length=221, Percent_Identity=26.2443438914027, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48036; Mature: 47905

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLFSVDEPEKAPPGRPLADRLRPKNLGEVVGQEHLTGPDGALTRLIGSGSLGSMIFWG
CCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHCHHCCCCCCHHHHHHHCCCCCCCEEEEC
PPGTGKTTVARLLAGETSLAFEQISAVFSGVADLKKVFETAKLRRANGRQTLLFVDEIHR
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
FNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVMVFHSLGEESIAKLMVRA
HHHHCCCCCCEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
EETEGRALPLDDEARAMLIRMSDGDGRASLTLAEEVWRAAKPGEVFDPEGLQRIVQRRAP
HCCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
IYDKGQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAMEDIGLA
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
DPQALVVANAAKDAYDYLGSPEGELAFAEATVYLATAPKSNAVYTAFKAATQAAKQHGSL
CCCEEEEEHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCC
LPPKHILNAPTKLMKEEDYGAGYRYDHDEPDAFSGQDYFPEKMGRQTFYDPPERGFERDI
CCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHH
RKRLDYWAKLRKERE
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
ADLFSVDEPEKAPPGRPLADRLRPKNLGEVVGQEHLTGPDGALTRLIGSGSLGSMIFWG
CCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHCHHCCCCCCHHHHHHHCCCCCCCEEEEC
PPGTGKTTVARLLAGETSLAFEQISAVFSGVADLKKVFETAKLRRANGRQTLLFVDEIHR
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
FNRAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVMVFHSLGEESIAKLMVRA
HHHHCCCCCCEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
EETEGRALPLDDEARAMLIRMSDGDGRASLTLAEEVWRAAKPGEVFDPEGLQRIVQRRAP
HCCCCCCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
IYDKGQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAMEDIGLA
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
DPQALVVANAAKDAYDYLGSPEGELAFAEATVYLATAPKSNAVYTAFKAATQAAKQHGSL
CCCEEEEEHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCC
LPPKHILNAPTKLMKEEDYGAGYRYDHDEPDAFSGQDYFPEKMGRQTFYDPPERGFERDI
CCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHH
RKRLDYWAKLRKERE
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]