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The map label for this gene is potC [H]

Identifier: 13470507

GI number: 13470507

Start: 164941

End: 165723

Strand: Reverse

Name: potC [H]

Synonym: mll0233

Alternate gene names: 13470507

Gene position: 165723-164941 (Counterclockwise)

Preceding gene: 13470508

Following gene: 13470506

Centisome position: 2.36

GC content: 63.47

Gene sequence:

>783_bases
ATGCGCCAGTTGGTCCGTGTCGTTTCCTGGCTCTACGCGCTTACCGTCTACGGCTTCATCTTCCTGCCTGTTGTCGTGCT
GGTGCTGTTCTCGCTGCAGGCGACTTCCTTCCCCATTCCGCCCTTCACCGGCCCGTCGCTGCGCTGGTACGACGCGGTGC
TCTCCGATGTCAGGCTGACCTCGGCGCTGGTCAATTCTCTGCTGGTCGCGTCAATCTCCTCCGCCGCCGCCGTCACGCTA
GGCTTCCTCTCGGCCTGGGGTTTCGCCCGCTTCGTGCTGCCGGGCTCCGGCCTGCTGCGCGGCCTGATCACGCTGCCGCT
GACGGTCAGCTATCTCATCATCGGCATGGGCCTGCTGGTGCTGTTCAACTGGGCCGGCGTGCCGAAATCGCTGCTTGCCG
CCGGCATCGGCCATGTCGTGATCAACCTGCCGCTATGCTTTGCCATCATCTACAGCCAGATGGGCGACCACCAGATCAAC
ATCGAGCGCGCCGCGCGCGACCTCGGCGCGCCGGAATGGAAGGTGCTGCTCTTGATCACCGTGCCGGTCATGGCGCCGGC
CATCTTCGCCGGCTTTTTCCTGTCGATGACCTTCTCCTGGGACGAGTTCGTGATTTCGTTCCTGCTGACCCGCTTCGACA
CCACGCTGCCGGTGGAGATCTGGAACCTGCTGCGCTCGGGCCTCAATCCCAAGACCAACGCGGTCGGCTCGCTGGTCTTC
GCCGTTTCCATCGTGCTGGTCGTGCTGTTCGAACTGACATTGCTGCGCCGGAGAAAGACATGA

Upstream 100 bases:

>100_bases
GATTTTCCGCTGGCCTCGGCGCTGTCGATCATCCTTATGGCGGTCGTCACTGTCGCCTACCTCGCCTGCGCCCGCTGGCT
GAAGATCGAGCGGGCCTGAG

Downstream 100 bases:

>100_bases
CCGCGCCTCTAGTCGACATCCGCGCGGTCTCGCACCGTTTCGGGCAGCTGGCCGTGCTGAAGAACGTGTCGCTGCGCATC
GAGCCCGGCAGCTACACCAT

Product: ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MRQLVRVVSWLYALTVYGFIFLPVVVLVLFSLQATSFPIPPFTGPSLRWYDAVLSDVRLTSALVNSLLVASISSAAAVTL
GFLSAWGFARFVLPGSGLLRGLITLPLTVSYLIIGMGLLVLFNWAGVPKSLLAAGIGHVVINLPLCFAIIYSQMGDHQIN
IERAARDLGAPEWKVLLLITVPVMAPAIFAGFFLSMTFSWDEFVISFLLTRFDTTLPVEIWNLLRSGLNPKTNAVGSLVF
AVSIVLVVLFELTLLRRRKT

Sequences:

>Translated_260_residues
MRQLVRVVSWLYALTVYGFIFLPVVVLVLFSLQATSFPIPPFTGPSLRWYDAVLSDVRLTSALVNSLLVASISSAAAVTL
GFLSAWGFARFVLPGSGLLRGLITLPLTVSYLIIGMGLLVLFNWAGVPKSLLAAGIGHVVINLPLCFAIIYSQMGDHQIN
IERAARDLGAPEWKVLLLITVPVMAPAIFAGFFLSMTFSWDEFVISFLLTRFDTTLPVEIWNLLRSGLNPKTNAVGSLVF
AVSIVLVVLFELTLLRRRKT
>Mature_260_residues
MRQLVRVVSWLYALTVYGFIFLPVVVLVLFSLQATSFPIPPFTGPSLRWYDAVLSDVRLTSALVNSLLVASISSAAAVTL
GFLSAWGFARFVLPGSGLLRGLITLPLTVSYLIIGMGLLVLFNWAGVPKSLLAAGIGHVVINLPLCFAIIYSQMGDHQIN
IERAARDLGAPEWKVLLLITVPVMAPAIFAGFFLSMTFSWDEFVISFLLTRFDTTLPVEIWNLLRSGLNPKTNAVGSLVF
AVSIVLVVLFELTLLRRRKT

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=231, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1787081, Length=248, Percent_Identity=34.2741935483871, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787714, Length=228, Percent_Identity=25.8771929824561, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28499; Mature: 28499

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]