Click here to switch to the map view.

The map label for this gene is cspE [C]

Identifier: 13470456

GI number: 13470456

Start: 118263

End: 118808

Strand: Direct

Name: cspE [C]

Synonym: mlr0168

Alternate gene names: 13470456

Gene position: 118263-118808 (Clockwise)

Preceding gene: 13470453

Following gene: 13470457

Centisome position: 1.68

GC content: 61.54

Gene sequence:

>546_bases
TTGAAGCGCGACGAAGGCGGCGATGCCGCCGACCTGACCGAAATTGCCGGCGCCATCAAGTGGTTCGATGTGGCCAAAGG
TTACGGGTTCATCCTACCCGATGACGGTGTCTCGGGCGATATCCTCCTCCATGTGACATGTCTTCGACGGGACGGTTTCC
AAACTGCCCTGGAGGGCGCGCGCGTGGTCTGCCTTGTCAAGCAGGGCGATCGCGGTCTGCAGGCTTTCCGTGTGCTTTCC
ATGGATGTCACCACCGCCGTCCATCCCGCGGAAATGCAGGAACAGCGCACGCATGTCGCGGTGACGCCGGAGAGCGGGCT
TGAACGCGCTTTGGTCAAGTGGTTCAACCGCACCAAGGGCTTCGGCTTCCTGACGCGTGGCGAAGGCACCGAGGACATTT
TCGTCCATATGGAGACCTTGCGCCGTTATGGCATCACCGAGCTTCGGCCGGGGCAGGTCGTGCTTGTCCGTTTCGGCCGC
GGTGACAAAGGCCTTATGGCCGCCGAAATTCACCCCGATATGGGCACCTTGCCGGTTTCGCACTAG

Upstream 100 bases:

>100_bases
CTGGTGTCAAGAATCAGTTGCGGTGTTCTTGAAAAAAGGGGGCATTCTTATGGGGGAAAAGGCCTCTTTGACGGGGCGGG
CCGGAACCCTTGGCGACGCC

Downstream 100 bases:

>100_bases
GACGATTTCGGCCGAGGATCTTGGATGACTCGCAGGAACTGGCTGACGGCGGGCGTGTTTTGCGCCATTGCTGCGGTGAT
CGTCGCCGCAGGTGCTTTCT

Product: cold shock protein

Products: NA

Alternate protein names: Transcriptional Regulator Cold Shock Protein; Cold Shock-Like Protein CspA; Cold Shock-Like Protein CspE; Cold Shock Protein CspA; Cold-Shock Domain Family Protein; Cold Shock Domain-Containing Protein CspD

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MKRDEGGDAADLTEIAGAIKWFDVAKGYGFILPDDGVSGDILLHVTCLRRDGFQTALEGARVVCLVKQGDRGLQAFRVLS
MDVTTAVHPAEMQEQRTHVAVTPESGLERALVKWFNRTKGFGFLTRGEGTEDIFVHMETLRRYGITELRPGQVVLVRFGR
GDKGLMAAEIHPDMGTLPVSH

Sequences:

>Translated_181_residues
MKRDEGGDAADLTEIAGAIKWFDVAKGYGFILPDDGVSGDILLHVTCLRRDGFQTALEGARVVCLVKQGDRGLQAFRVLS
MDVTTAVHPAEMQEQRTHVAVTPESGLERALVKWFNRTKGFGFLTRGEGTEDIFVHMETLRRYGITELRPGQVVLVRFGR
GDKGLMAAEIHPDMGTLPVSH
>Mature_181_residues
MKRDEGGDAADLTEIAGAIKWFDVAKGYGFILPDDGVSGDILLHVTCLRRDGFQTALEGARVVCLVKQGDRGLQAFRVLS
MDVTTAVHPAEMQEQRTHVAVTPESGLERALVKWFNRTKGFGFLTRGEGTEDIFVHMETLRRYGITELRPGQVVLVRFGR
GDKGLMAAEIHPDMGTLPVSH

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786841, Length=70, Percent_Identity=38.5714285714286, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19923; Mature: 19923

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRDEGGDAADLTEIAGAIKWFDVAKGYGFILPDDGVSGDILLHVTCLRRDGFQTALEGA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEECCCCHHHHHCCC
RVVCLVKQGDRGLQAFRVLSMDVTTAVHPAEMQEQRTHVAVTPESGLERALVKWFNRTKG
EEEEEEECCCCCCHHHEEEEEHHHHCCCCHHHHHCCCEEEECCCHHHHHHHHHHHHCCCC
FGFLTRGEGTEDIFVHMETLRRYGITELRPGQVVLVRFGRGDKGLMAAEIHPDMGTLPVS
CEEEECCCCCCHHEEEHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCC
H
C
>Mature Secondary Structure
MKRDEGGDAADLTEIAGAIKWFDVAKGYGFILPDDGVSGDILLHVTCLRRDGFQTALEGA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEECCCCHHHHHCCC
RVVCLVKQGDRGLQAFRVLSMDVTTAVHPAEMQEQRTHVAVTPESGLERALVKWFNRTKG
EEEEEEECCCCCCHHHEEEEEHHHHCCCCHHHHHCCCEEEECCCHHHHHHHHHHHHCCCC
FGFLTRGEGTEDIFVHMETLRRYGITELRPGQVVLVRFGRGDKGLMAAEIHPDMGTLPVS
CEEEECCCCCCHHEEEHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCC
H
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA