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The map label for this gene is yabI [C]

Identifier: 13470419

GI number: 13470419

Start: 84642

End: 85283

Strand: Reverse

Name: yabI [C]

Synonym: mll0121

Alternate gene names: 13470419

Gene position: 85283-84642 (Counterclockwise)

Preceding gene: 13470420

Following gene: 13470415

Centisome position: 1.21

GC content: 66.51

Gene sequence:

>642_bases
GTGCAGGCGTTCATCGACCAGAGCGTTTGTTTCATCGAGAACCATCAGGCATGGGCCGGCCTCGTGGTCGGGCTGCTGGC
CTTCGGTGAGTCGCTTGTGCTGGTTGGCATCCTCTTGCCCGGCACCACGGTGCTCATCATCGTCGGCGGCCTGGTCGGGG
CCGGCATCGTCCAGCCTTTGCCGGTGCTTCTGGCCGCGATGGTCGGGGCGGCGCTCGGCGATACCATCTCCTACTTCCTC
GGCAAATGGCTGGGGCGCAGTGTCGTCCACAAATGGCCGCTCAACCGCTACCGCCGCGAGGTCGCCAGGGCGCGGCTGTT
CTTCCACCGTTATGGTTTCGCAGCGGTTTTCGTCGGCCGCTTCTTCGGCCCGGTCCGCGCCACCGTGCCGCTGGTCGCCG
GCATGATGGGCATGCACCGGCGCCGCTTCCAGATCGCCAATATCCTGTCGGCGATCATCTGGGCGCCGGTCGTGCTGTCG
CCGGGATGGCTGGTGGCCAAGGGCGCCGGCAGCATCCCCGAACTCGACGTGACCAGCCTGTTCGGGCTGGCGGCGATCGG
CGTGGTCGCCTTGATTATCATAGCAGTGATCGCGCTCAAGCTTCGGCGTAAGCGAACCGCCGCGCCTAGCCGCGCTTCCT
GA

Upstream 100 bases:

>100_bases
GGCGGAGAATTATTACGGCTGGCTCGTCAACGACAAGCTCGACGAACTCAGAAGCCTGCTCGACAGCGGCAGCTGAGAAA
CGCTTTCAACAGGAGCTTGC

Downstream 100 bases:

>100_bases
ACACGCCGATCATCGGCCCTAGATTCCAGTAGTCGTCGTTGCGGCCGATGGCGGGCGCAAACAGGCTCGATATCGTGCCG
TCGAGAAACAGCGCATTGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MQAFIDQSVCFIENHQAWAGLVVGLLAFGESLVLVGILLPGTTVLIIVGGLVGAGIVQPLPVLLAAMVGAALGDTISYFL
GKWLGRSVVHKWPLNRYRREVARARLFFHRYGFAAVFVGRFFGPVRATVPLVAGMMGMHRRRFQIANILSAIIWAPVVLS
PGWLVAKGAGSIPELDVTSLFGLAAIGVVALIIIAVIALKLRRKRTAAPSRAS

Sequences:

>Translated_213_residues
MQAFIDQSVCFIENHQAWAGLVVGLLAFGESLVLVGILLPGTTVLIIVGGLVGAGIVQPLPVLLAAMVGAALGDTISYFL
GKWLGRSVVHKWPLNRYRREVARARLFFHRYGFAAVFVGRFFGPVRATVPLVAGMMGMHRRRFQIANILSAIIWAPVVLS
PGWLVAKGAGSIPELDVTSLFGLAAIGVVALIIIAVIALKLRRKRTAAPSRAS
>Mature_213_residues
MQAFIDQSVCFIENHQAWAGLVVGLLAFGESLVLVGILLPGTTVLIIVGGLVGAGIVQPLPVLLAAMVGAALGDTISYFL
GKWLGRSVVHKWPLNRYRREVARARLFFHRYGFAAVFVGRFFGPVRATVPLVAGMMGMHRRRFQIANILSAIIWAPVVLS
PGWLVAKGAGSIPELDVTSLFGLAAIGVVALIIIAVIALKLRRKRTAAPSRAS

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1786252, Length=174, Percent_Identity=35.0574712643678, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789384, Length=137, Percent_Identity=37.2262773722628, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1789481, Length=141, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1788656, Length=167, Percent_Identity=25.748502994012, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22805; Mature: 22805

Theoretical pI: Translated: 12.06; Mature: 12.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAFIDQSVCFIENHQAWAGLVVGLLAFGESLVLVGILLPGTTVLIIVGGLVGAGIVQPL
CCCHHCCCHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
PVLLAAMVGAALGDTISYFLGKWLGRSVVHKWPLNRYRREVARARLFFHRYGFAAVFVGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFGPVRATVPLVAGMMGMHRRRFQIANILSAIIWAPVVLSPGWLVAKGAGSIPELDVTSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHH
FGLAAIGVVALIIIAVIALKLRRKRTAAPSRAS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQAFIDQSVCFIENHQAWAGLVVGLLAFGESLVLVGILLPGTTVLIIVGGLVGAGIVQPL
CCCHHCCCHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
PVLLAAMVGAALGDTISYFLGKWLGRSVVHKWPLNRYRREVARARLFFHRYGFAAVFVGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFGPVRATVPLVAGMMGMHRRRFQIANILSAIIWAPVVLSPGWLVAKGAGSIPELDVTSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHH
FGLAAIGVVALIIIAVIALKLRRKRTAAPSRAS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]