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The map label for this gene is rimM

Identifier: 161723309

GI number: 161723309

Start: 1490450

End: 1490977

Strand: Direct

Name: rimM

Synonym: PM1296

Alternate gene names: 161723309

Gene position: 1490450-1490977 (Clockwise)

Preceding gene: 15603880

Following gene: 15603162

Centisome position: 66.02

GC content: 39.58

Gene sequence:

>528_bases
ATGGAACAGCAAAGAATTGAAGTAGTTGGCAAATTAGGCTCAACTTATGGCATTCGCGGTTGGTTACGTATTTATTCATC
GACAGAATATGCTGAAAGCATTTTTGATTACCAACCTTGGTTTTTAAAAATTAAAGGGCAATGGCAGCCTACAGAGTTAG
AGAGTTGGCGTTACCACAATAACGATTTAATCGTTAAATTGAAACATGTGGACGACCGAGAAACCGCACAAACTTTAGCC
AATATTGAAATTGGCGTTGATTTGGCGGTTTTCCCTGAGCTAGAAGAAGGGGATTATTACTGGCATGATTTAATCGGCTG
TAATGTGGTTAACCTTGAAAACTATGCGATGGGCACAGTGACCGAAATGATGGAAACAGGATCTAACGATGTATTGGTTG
TGCGTGCAAAAAGCAAAGATGCTTTTGGAAAACAAGAGCGGTTAATTCCGTTTTTGTATGAACAAGTAGTTAAAAGAGTA
GATCTCAACACGAAGACAATTGTCGTGGATTGGGACGCTGGTTTCTAA

Upstream 100 bases:

>100_bases
CTTTATCAGATCGCGTTTCAGCTTTAGTTAAAGAAGCGCAAAAAGCAGCGTAATTTCCGCTAATTTTATTAGCAGTAGTA
AAACGAGATAGGTGGTAAAT

Downstream 100 bases:

>100_bases
CCTCAGGTATGCCGTTTAGCTTTGGCTGTAGCATTTTGATATAAGGGTCACTTATGTTAGTTGGGATTATTAGTTTGTTC
CCCGAAATGTTCAAAGCCAT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MEQQRIEVVGKLGSTYGIRGWLRIYSSTEYAESIFDYQPWFLKIKGQWQPTELESWRYHNNDLIVKLKHVDDRETAQTLA
NIEIGVDLAVFPELEEGDYYWHDLIGCNVVNLENYAMGTVTEMMETGSNDVLVVRAKSKDAFGKQERLIPFLYEQVVKRV
DLNTKTIVVDWDAGF

Sequences:

>Translated_175_residues
MEQQRIEVVGKLGSTYGIRGWLRIYSSTEYAESIFDYQPWFLKIKGQWQPTELESWRYHNNDLIVKLKHVDDRETAQTLA
NIEIGVDLAVFPELEEGDYYWHDLIGCNVVNLENYAMGTVTEMMETGSNDVLVVRAKSKDAFGKQERLIPFLYEQVVKRV
DLNTKTIVVDWDAGF
>Mature_175_residues
MEQQRIEVVGKLGSTYGIRGWLRIYSSTEYAESIFDYQPWFLKIKGQWQPTELESWRYHNNDLIVKLKHVDDRETAQTLA
NIEIGVDLAVFPELEEGDYYWHDLIGCNVVNLENYAMGTVTEMMETGSNDVLVVRAKSKDAFGKQERLIPFLYEQVVKRV
DLNTKTIVVDWDAGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=168, Percent_Identity=65.4761904761905, Blast_Score=243, Evalue=4e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_PASMU (P57935)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_246234.2
- ProteinModelPortal:   P57935
- SMR:   P57935
- GeneID:   1244643
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM1296
- NMPDR:   fig|272843.1.peg.1297
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- ProtClustDB:   PRK00122
- BioCyc:   PMUL272843:PM1296-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20332; Mature: 20332

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQQRIEVVGKLGSTYGIRGWLRIYSSTEYAESIFDYQPWFLKIKGQWQPTELESWRYHN
CCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEC
NDLIVKLKHVDDRETAQTLANIEIGVDLAVFPELEEGDYYWHDLIGCNVVNLENYAMGTV
CCEEEEEECCCCHHHHHHHHHEEECCEEEECCCCCCCCEEEECCCCCEEEEECCCCHHHH
TEMMETGSNDVLVVRAKSKDAFGKQERLIPFLYEQVVKRVDLNTKTIVVDWDAGF
HHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCC
>Mature Secondary Structure
MEQQRIEVVGKLGSTYGIRGWLRIYSSTEYAESIFDYQPWFLKIKGQWQPTELESWRYHN
CCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEC
NDLIVKLKHVDDRETAQTLANIEIGVDLAVFPELEEGDYYWHDLIGCNVVNLENYAMGTV
CCEEEEEECCCCHHHHHHHHHEEECCEEEECCCCCCCCEEEECCCCCEEEEECCCCHHHH
TEMMETGSNDVLVVRAKSKDAFGKQERLIPFLYEQVVKRVDLNTKTIVVDWDAGF
HHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100