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The map label for this gene is ynfI [C]

Identifier: 15603622

GI number: 15603622

Start: 1981058

End: 1981663

Strand: Direct

Name: ynfI [C]

Synonym: PM1757

Alternate gene names: 15603622

Gene position: 1981058-1981663 (Clockwise)

Preceding gene: 15603621

Following gene: 15603623

Centisome position: 87.76

GC content: 40.76

Gene sequence:

>606_bases
ATGAATATGCCACAACGTCAATGGGTTTCCTTATCAGGGCGTTTATTAGGTGCTTTATTTTATTATGCACCGACTGAAGC
ACAGCTTGAATCCATTTTGGATTTTTTCCGTCAGCCTGATTGGCAACATGAATGGCAGCATGAAGTGGATGCAACGATCT
TGCAGGCTATTCAGCAAGGTCTTACAACCGAAGCATTAGATACAACATACCAAGAATTATTTATTGGTCCCGCTGCCTTG
AGTGCGCCACCTTGGGGATCGGTTTATCTTGATCCCGAGTCAGTACTTTTTGGTGATTCTTTACTGAAATTACGCGAATT
TTTACGCCAACACCGTGTTGAGTTTGTAACCACACAAAATGAACCGGAGGATCATATTGGGCTAATGTTGTTACTGTCTG
CATATTTAGCGGAAAATCGCCCAGAATTATTGGTTATCTTTTTAAGTGAGCATGTCTTTACTTGGTCAACACGTTATTTA
CAACTTTTAGCGAATCAACAAACGTCGGTATTTTATCGAGGTCTTGCGTTATTGACGCAAGCAACGTTAAATCAATGGCA
GCAACAGCTTGATATTCAAGTGAACAGCGTACGTCTTTATCGTTAA

Upstream 100 bases:

>100_bases
GTTGGGGCATAGCAAACCTAACGGGGTAGCGCTCGCGCTGCCCTGAACAACATAAGTGCTAAGTGCGGTCTATTTTATGA
GAATTTTGGGGATTCATGTT

Downstream 100 bases:

>100_bases
ATCACATGAGGCAAAGCATGCACAATAATGACTCAACTCATCGGCACCGTCAGAAAGATGAACGTTATTATGAAGCCTAT
CTTTCTCACCATACTATTTC

Product: twin-argninine leader-binding protein DmsD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MNMPQRQWVSLSGRLLGALFYYAPTEAQLESILDFFRQPDWQHEWQHEVDATILQAIQQGLTTEALDTTYQELFIGPAAL
SAPPWGSVYLDPESVLFGDSLLKLREFLRQHRVEFVTTQNEPEDHIGLMLLLSAYLAENRPELLVIFLSEHVFTWSTRYL
QLLANQQTSVFYRGLALLTQATLNQWQQQLDIQVNSVRLYR

Sequences:

>Translated_201_residues
MNMPQRQWVSLSGRLLGALFYYAPTEAQLESILDFFRQPDWQHEWQHEVDATILQAIQQGLTTEALDTTYQELFIGPAAL
SAPPWGSVYLDPESVLFGDSLLKLREFLRQHRVEFVTTQNEPEDHIGLMLLLSAYLAENRPELLVIFLSEHVFTWSTRYL
QLLANQQTSVFYRGLALLTQATLNQWQQQLDIQVNSVRLYR
>Mature_201_residues
MNMPQRQWVSLSGRLLGALFYYAPTEAQLESILDFFRQPDWQHEWQHEVDATILQAIQQGLTTEALDTTYQELFIGPAAL
SAPPWGSVYLDPESVLFGDSLLKLREFLRQHRVEFVTTQNEPEDHIGLMLLLSAYLAENRPELLVIFLSEHVFTWSTRYL
QLLANQQTSVFYRGLALLTQATLNQWQQQLDIQVNSVRLYR

Specific function: Unknown

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. DmsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081942, Length=194, Percent_Identity=44.3298969072165, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1787272, Length=186, Percent_Identity=26.3440860215054, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 23357; Mature: 23357

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMPQRQWVSLSGRLLGALFYYAPTEAQLESILDFFRQPDWQHEWQHEVDATILQAIQQG
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
LTTEALDTTYQELFIGPAALSAPPWGSVYLDPESVLFGDSLLKLREFLRQHRVEFVTTQN
CCHHHHHHHHHHHHCCCHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHEEEECCC
EPEDHIGLMLLLSAYLAENRPELLVIFLSEHVFTWSTRYLQLLANQQTSVFYRGLALLTQ
CCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ATLNQWQQQLDIQVNSVRLYR
HHHHHHHHHHCCEEEEEEECC
>Mature Secondary Structure
MNMPQRQWVSLSGRLLGALFYYAPTEAQLESILDFFRQPDWQHEWQHEVDATILQAIQQG
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
LTTEALDTTYQELFIGPAALSAPPWGSVYLDPESVLFGDSLLKLREFLRQHRVEFVTTQN
CCHHHHHHHHHHHHCCCHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHEEEECCC
EPEDHIGLMLLLSAYLAENRPELLVIFLSEHVFTWSTRYLQLLANQQTSVFYRGLALLTQ
CCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ATLNQWQQQLDIQVNSVRLYR
HHHHHHHHHHCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]