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The map label for this gene is lsrR [H]

Identifier: 15603511

GI number: 15603511

Start: 1854753

End: 1855706

Strand: Reverse

Name: lsrR [H]

Synonym: PM1646

Alternate gene names: 15603511

Gene position: 1855706-1854753 (Counterclockwise)

Preceding gene: 15603512

Following gene: 15603510

Centisome position: 82.2

GC content: 38.78

Gene sequence:

>954_bases
ATGAGTGAAGAAGAAATGGATTTATTAACCGAGATTGCAGTTTCTTACTATGAACATGAGTTAACGCAAGAGGAAATTGC
AAACCGATTTAATATCTCTCGAGTTAAGATTGGTCGGTTATTAAAGAAAGCCCGTCAGGAAGGGATTGTTGAAATTAATG
TGAAATATCACCCGATTTTCACATCAAAATTAGAACAGCGTTTGATAGAACAGTTTGGTATTCATCGCGCCTTAATTGCT
ATTGATACTCAGAATGAAGTAGAACAGCGCAAACAAGTCGCTGCGTTAGTAAATGCCTATTTATCTAGTACGTTAAAAGA
CGGTATGACAGTAGCAGTTGGGCAAGGACGAAATGTAGCCGCCGTTGGAGAATATGTGGGCGTTTTTCCTGAGCGAAATT
GTAAGTTCATTTGTGGTATCGGTGGTACACATCGAATAGGTCCACCAATAGATGCTGACCATATTTGCCGTAACTTAGCG
CGTAAATTTAATGGCACTAACGAAACGTTGTATTCCCCTGCTTATTTAGAAAAGCCCGAATTTAGAGATATTTTTTTACA
AAATGGGGTAATAAAAGAAACGCTTGATAAAGCTCGCAAAGCGGATATTGCTTTGGTTGGCATCGGTGATATGAATGAGA
ATAGCTATATGGTTCAGTTGGGATGGTTTACTCCTCAGGAAATTACGCATGCACGCATGAATTTAGGTGTGGTAGGTGAG
ATTGCAGGCTATGGCTTTTTTAACTTTCAAGGAGAGCCTGCGGATACCGTGATGAATAACCGAGTGATTGGTTTAAGTCT
TGAAGATTTAAGAAAGATACCTTGCGTGATAGGCATCGCTTCTGAAAATACAAAAGCGACAGCAATTTTGGGCGCTTTAA
GAACAGGAATTATTAATATTATTGCTACAACCGCCAGCAACATTAACACAATTTTGAGTTTAACGAAAAGTTAA

Upstream 100 bases:

>100_bases
AAGAAAATAGAAGGTTTGATTCCTTTGCCGTTAATTGAAACGACATTGATTGAATCAAAAAAATACATTGATGATATTTA
TAAAGGATTAGTGAATAAAA

Downstream 100 bases:

>100_bases
GATACTGATAAGGAGCTAAAAATGAAAATCGCCATTGGCTGTGATGATGCGGCTTATAATTTGAAGGTGGAATTAATTAA
GTTTTTAACTTCCCTTGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MSEEEMDLLTEIAVSYYEHELTQEEIANRFNISRVKIGRLLKKARQEGIVEINVKYHPIFTSKLEQRLIEQFGIHRALIA
IDTQNEVEQRKQVAALVNAYLSSTLKDGMTVAVGQGRNVAAVGEYVGVFPERNCKFICGIGGTHRIGPPIDADHICRNLA
RKFNGTNETLYSPAYLEKPEFRDIFLQNGVIKETLDKARKADIALVGIGDMNENSYMVQLGWFTPQEITHARMNLGVVGE
IAGYGFFNFQGEPADTVMNNRVIGLSLEDLRKIPCVIGIASENTKATAILGALRTGIINIIATTASNINTILSLTKS

Sequences:

>Translated_317_residues
MSEEEMDLLTEIAVSYYEHELTQEEIANRFNISRVKIGRLLKKARQEGIVEINVKYHPIFTSKLEQRLIEQFGIHRALIA
IDTQNEVEQRKQVAALVNAYLSSTLKDGMTVAVGQGRNVAAVGEYVGVFPERNCKFICGIGGTHRIGPPIDADHICRNLA
RKFNGTNETLYSPAYLEKPEFRDIFLQNGVIKETLDKARKADIALVGIGDMNENSYMVQLGWFTPQEITHARMNLGVVGE
IAGYGFFNFQGEPADTVMNNRVIGLSLEDLRKIPCVIGIASENTKATAILGALRTGIINIIATTASNINTILSLTKS
>Mature_316_residues
SEEEMDLLTEIAVSYYEHELTQEEIANRFNISRVKIGRLLKKARQEGIVEINVKYHPIFTSKLEQRLIEQFGIHRALIAI
DTQNEVEQRKQVAALVNAYLSSTLKDGMTVAVGQGRNVAAVGEYVGVFPERNCKFICGIGGTHRIGPPIDADHICRNLAR
KFNGTNETLYSPAYLEKPEFRDIFLQNGVIKETLDKARKADIALVGIGDMNENSYMVQLGWFTPQEITHARMNLGVVGEI
AGYGFFNFQGEPADTVMNNRVIGLSLEDLRKIPCVIGIASENTKATAILGALRTGIINIIATTASNINTILSLTKS

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFG operon and its own transcription. In the presence of AI- 2, lsrR is inactivated by binding phospho-AI-2, leading to the trans

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=320, Percent_Identity=28.4375, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87082414, Length=291, Percent_Identity=23.3676975945017, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 35130; Mature: 34999

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEEMDLLTEIAVSYYEHELTQEEIANRFNISRVKIGRLLKKARQEGIVEINVKYHPIF
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEEECCH
TSKLEQRLIEQFGIHRALIAIDTQNEVEQRKQVAALVNAYLSSTLKDGMTVAVGQGRNVA
HHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEE
AVGEYVGVFPERNCKFICGIGGTHRIGPPIDADHICRNLARKFNGTNETLYSPAYLEKPE
HHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCHHCCCCC
FRDIFLQNGVIKETLDKARKADIALVGIGDMNENSYMVQLGWFTPQEITHARMNLGVVGE
HHHHHHCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHCCCEEEH
IAGYGFFNFQGEPADTVMNNRVIGLSLEDLRKIPCVIGIASENTKATAILGALRTGIINI
HHCCCEEECCCCCHHHHHCCCEEEEEHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHH
IATTASNINTILSLTKS
HHHCCCCHHHHHEECCC
>Mature Secondary Structure 
SEEEMDLLTEIAVSYYEHELTQEEIANRFNISRVKIGRLLKKARQEGIVEINVKYHPIF
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEEECCH
TSKLEQRLIEQFGIHRALIAIDTQNEVEQRKQVAALVNAYLSSTLKDGMTVAVGQGRNVA
HHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEE
AVGEYVGVFPERNCKFICGIGGTHRIGPPIDADHICRNLARKFNGTNETLYSPAYLEKPE
HHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCHHCCCCC
FRDIFLQNGVIKETLDKARKADIALVGIGDMNENSYMVQLGWFTPQEITHARMNLGVVGE
HHHHHHCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHCCCEEEH
IAGYGFFNFQGEPADTVMNNRVIGLSLEDLRKIPCVIGIASENTKATAILGALRTGIINI
HHCCCEEECCCCCHHHHHCCCEEEEEHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHH
IATTASNINTILSLTKS
HHHCCCCHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA