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The map label for this gene is hpaA [C]

Identifier: 15603389

GI number: 15603389

Start: 1723279

End: 1724283

Strand: Direct

Name: hpaA [C]

Synonym: PM1524

Alternate gene names: 15603389

Gene position: 1723279-1724283 (Clockwise)

Preceding gene: 15603386

Following gene: 15603390

Centisome position: 76.34

GC content: 36.02

Gene sequence:

>1005_bases
GTGATCTCTATCGCTGTTTTAAGGATCAAAACTATACAGGCGAAAAAGCATAGTTTACATTCAAGCAAGAAGGATAAGGC
GGAAGTAAATTGGAGGGAGGTTATGCGAGAGCAGTCCTTTGAAACACAAAATATTAATATTGAAAAAACCTATGGTGGAC
AAGAAAGTAGTAGCATCATCCACTATGAAACCTTTGATAATCTTGCCTTATTTTATGGACGGAAATCGTTGGTGCATTTT
CATGATCGCTTTTATCAAGTGCACTATTTAACTGAAGGAAGCATTGCATTACAGTTAGATGCACATGAATATCGCCTGTA
TGCCCCTTGTTTTTTTATTACTCCGCCTTCTATTCCTCATGGCTTTTACACCGATTTAGATACGCATGGGCACGTTTTAA
CCATTCCACAAGAGTTTGTTTGGCAGTTATTAGAATCGTTAAAACGCGATATCAATTATTTTTATCCCATGTGTATTGAA
TTATCTCCGCAAGAGGAAGCACAGCAAATTTTTAAATTTGAATATTTATTTAATTTATTGGCGGGAGAGTACCGTCAACA
TACGGACGAAAAACAGACCGCACTGCGTTTAAGTGCGAAATTAATTTTATTAGAGATTTATCGTTTGTCGAAAAGCAATG
AGAAAAAGTACAGTCCGCGTAACAACGAGCTGTATTTATTTAATCAGTTTAACTTCCTCATAGAAGATAATTTCAAAAAT
AATTGGCGCATTAATGATTATTTAGATCGTTTATGCATTAGCGAAAGTAAATTAAATGCCATTTGTCAGCATTTCTCAGC
TACTTCACCAAAACGTCTTATCATTGAACGCCAAATTCAAGAAGCGAAACGGAAGCTATTATTTACTCAGCATTCGATCT
ATCAAATCGCCTATGATCTCGGTTTTAAAGATCCTGCCTATTTCTCGCGTTTTTTCCAAAAAGAAACGCAATTGTCACCA
AAAGCATTTCGCGATCAAGATCACATATCTTCGAATCCATCGTGA

Upstream 100 bases:

>100_bases
AATTTGTTAAATTTATAGTGGATCTCTGCGCAAGAGAAAATGCAATTTTCGTGTCAAAAAATGTACTTTTCCGTATTTAG
ACGGGAAAAATGAATAAAAT

Downstream 100 bases:

>100_bases
TTTTTTGTGAAAAGTACAATTTTTCACCTGAAAAGTACATTTAAAACTCGGTTTAACTCCATTATAACTGTAACAACCTA
TTAACAATTTGGTTACATTG

Product: HpaA

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulator PobR; Regulator Of 4HPA-Hydroxylase Operon; Transcriptional Regulatory Protein; PobR Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Bacterial Regulatory Helix-Turn-Helix Protein; Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type; Transcriptional Regulator Pobr Arac Family Protein; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; Transcriptional Regulatory Protein AraC-Type; AraC Family Transcription Regulator Protein; Regulatory Helix-Turn-Helix Protein AraC Family; AraC Family Transcription Regulator; AraC-Family Transcriptional Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MISIAVLRIKTIQAKKHSLHSSKKDKAEVNWREVMREQSFETQNINIEKTYGGQESSSIIHYETFDNLALFYGRKSLVHF
HDRFYQVHYLTEGSIALQLDAHEYRLYAPCFFITPPSIPHGFYTDLDTHGHVLTIPQEFVWQLLESLKRDINYFYPMCIE
LSPQEEAQQIFKFEYLFNLLAGEYRQHTDEKQTALRLSAKLILLEIYRLSKSNEKKYSPRNNELYLFNQFNFLIEDNFKN
NWRINDYLDRLCISESKLNAICQHFSATSPKRLIIERQIQEAKRKLLFTQHSIYQIAYDLGFKDPAYFSRFFQKETQLSP
KAFRDQDHISSNPS

Sequences:

>Translated_334_residues
MISIAVLRIKTIQAKKHSLHSSKKDKAEVNWREVMREQSFETQNINIEKTYGGQESSSIIHYETFDNLALFYGRKSLVHF
HDRFYQVHYLTEGSIALQLDAHEYRLYAPCFFITPPSIPHGFYTDLDTHGHVLTIPQEFVWQLLESLKRDINYFYPMCIE
LSPQEEAQQIFKFEYLFNLLAGEYRQHTDEKQTALRLSAKLILLEIYRLSKSNEKKYSPRNNELYLFNQFNFLIEDNFKN
NWRINDYLDRLCISESKLNAICQHFSATSPKRLIIERQIQEAKRKLLFTQHSIYQIAYDLGFKDPAYFSRFFQKETQLSP
KAFRDQDHISSNPS
>Mature_334_residues
MISIAVLRIKTIQAKKHSLHSSKKDKAEVNWREVMREQSFETQNINIEKTYGGQESSSIIHYETFDNLALFYGRKSLVHF
HDRFYQVHYLTEGSIALQLDAHEYRLYAPCFFITPPSIPHGFYTDLDTHGHVLTIPQEFVWQLLESLKRDINYFYPMCIE
LSPQEEAQQIFKFEYLFNLLAGEYRQHTDEKQTALRLSAKLILLEIYRLSKSNEKKYSPRNNELYLFNQFNFLIEDNFKN
NWRINDYLDRLCISESKLNAICQHFSATSPKRLIIERQIQEAKRKLLFTQHSIYQIAYDLGFKDPAYFSRFFQKETQLSP
KAFRDQDHISSNPS

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39715; Mature: 39715

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISIAVLRIKTIQAKKHSLHSSKKDKAEVNWREVMREQSFETQNINIEKTYGGQESSSII
CEEEEEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCEE
HYETFDNLALFYGRKSLVHFHDRFYQVHYLTEGSIALQLDAHEYRLYAPCFFITPPSIPH
EEECCCCEEEECCCHHHHHHHHHEEEEEEEECCCEEEEEECCCEEEEEEEEEECCCCCCC
GFYTDLDTHGHVLTIPQEFVWQLLESLKRDINYFYPMCIELSPQEEAQQIFKFEYLFNLL
CCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHH
AGEYRQHTDEKQTALRLSAKLILLEIYRLSKSNEKKYSPRNNELYLFNQFNFLIEDNFKN
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCC
NWRINDYLDRLCISESKLNAICQHFSATSPKRLIIERQIQEAKRKLLFTQHSIYQIAYDL
CCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFKDPAYFSRFFQKETQLSPKAFRDQDHISSNPS
CCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure
MISIAVLRIKTIQAKKHSLHSSKKDKAEVNWREVMREQSFETQNINIEKTYGGQESSSII
CEEEEEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCEE
HYETFDNLALFYGRKSLVHFHDRFYQVHYLTEGSIALQLDAHEYRLYAPCFFITPPSIPH
EEECCCCEEEECCCHHHHHHHHHEEEEEEEECCCEEEEEECCCEEEEEEEEEECCCCCCC
GFYTDLDTHGHVLTIPQEFVWQLLESLKRDINYFYPMCIELSPQEEAQQIFKFEYLFNLL
CCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHH
AGEYRQHTDEKQTALRLSAKLILLEIYRLSKSNEKKYSPRNNELYLFNQFNFLIEDNFKN
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCC
NWRINDYLDRLCISESKLNAICQHFSATSPKRLIIERQIQEAKRKLLFTQHSIYQIAYDL
CCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFKDPAYFSRFFQKETQLSPKAFRDQDHISSNPS
CCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA