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The map label for this gene is ygbI [C]

Identifier: 15603232

GI number: 15603232

Start: 1558184

End: 1558945

Strand: Direct

Name: ygbI [C]

Synonym: PM1367

Alternate gene names: 15603232

Gene position: 1558184-1558945 (Clockwise)

Preceding gene: 15603222

Following gene: 15603234

Centisome position: 69.02

GC content: 39.37

Gene sequence:

>762_bases
ATGTTAATCCCCGCAGAACGTCAAAAGAAAATCCTTAATTTAATTCATCAACAAGGCATTGTCCGCATTACGAATCTGGT
CGAATTAATGGGTGTTTCCCACATGACCATTCGTCGCGATATTCAAAAATTGGAAGAAAAGGGCAAAGTCGTTTCTGTTT
CGGGGGGAGTACAGCTATTAGAAAGGTTAATTTCCGAGCCTACTCGCGATGATAAATCGCTGTTATTTCATCAACAAAAA
TCAGCGATTGGTTTAGTCGCCGCAAATCTGATTCCTGCCAATGCAACGATCTATTTAGATGCAGGCACCACCACTTTAGA
AATCGCCAAACAGATTACAGATCGTGATGACTTATTGGTAATCACCAATGATTTTGGCATTGTGGATTACTTAATTAGCA
ATGGACGTTGTGACTTAATTCATACTGGGGGGCGAGTGTGTAAAGAAAATCGTTCTTCTGTGGGGGAATTATCTGCCCAA
TTTTTGCGGAACATTTCTATTGATATCGCCTTTATTTCGACTTCCTCATGGAATTTACAAGGATTGACGACACCAGATGA
AAATAAATTACCGGTTAAACGTGCCATTGTACAAGCTAGCAGACGGAATATCCTTGTCACAGACTCCTCAAAATACGGCA
AAGTCGCGACGTTTTTACTCTATGCTCTGGATACATTAGATCAAATTATTTGCGATAAAGCTTTGCTCATCAACGCGCAA
GAAAAGATTAAAGAAATGGATATTGAACTTTTGTTAGTGTAA

Upstream 100 bases:

>100_bases
TAAATGCGTTTATTTTTAAGCCTTAAAATAGAAAACTTACACAGAATAAAAAAAATCAGCGTATAATTTGCCTTAATTTT
GGTTAAATGGATGTAAAAGC

Downstream 100 bases:

>100_bases
GAAAAAATGCGGTGAATATGTCAACATATTCACCGCATTGTTATGCTCGTTTAATGCTTATTTTGCTGGAATCGCAGCTA
ACAACTTCGTCAGTAGCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MLIPAERQKKILNLIHQQGIVRITNLVELMGVSHMTIRRDIQKLEEKGKVVSVSGGVQLLERLISEPTRDDKSLLFHQQK
SAIGLVAANLIPANATIYLDAGTTTLEIAKQITDRDDLLVITNDFGIVDYLISNGRCDLIHTGGRVCKENRSSVGELSAQ
FLRNISIDIAFISTSSWNLQGLTTPDENKLPVKRAIVQASRRNILVTDSSKYGKVATFLLYALDTLDQIICDKALLINAQ
EKIKEMDIELLLV

Sequences:

>Translated_253_residues
MLIPAERQKKILNLIHQQGIVRITNLVELMGVSHMTIRRDIQKLEEKGKVVSVSGGVQLLERLISEPTRDDKSLLFHQQK
SAIGLVAANLIPANATIYLDAGTTTLEIAKQITDRDDLLVITNDFGIVDYLISNGRCDLIHTGGRVCKENRSSVGELSAQ
FLRNISIDIAFISTSSWNLQGLTTPDENKLPVKRAIVQASRRNILVTDSSKYGKVATFLLYALDTLDQIICDKALLINAQ
EKIKEMDIELLLV
>Mature_253_residues
MLIPAERQKKILNLIHQQGIVRITNLVELMGVSHMTIRRDIQKLEEKGKVVSVSGGVQLLERLISEPTRDDKSLLFHQQK
SAIGLVAANLIPANATIYLDAGTTTLEIAKQITDRDDLLVITNDFGIVDYLISNGRCDLIHTGGRVCKENRSSVGELSAQ
FLRNISIDIAFISTSSWNLQGLTTPDENKLPVKRAIVQASRRNILVTDSSKYGKVATFLLYALDTLDQIICDKALLINAQ
EKIKEMDIELLLV

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=251, Percent_Identity=52.191235059761, Blast_Score=266, Evalue=1e-72,
Organism=Escherichia coli, GI1789519, Length=252, Percent_Identity=30.5555555555556, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1789829, Length=248, Percent_Identity=27.8225806451613, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1789059, Length=251, Percent_Identity=29.0836653386454, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87082344, Length=247, Percent_Identity=25.9109311740891, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787540, Length=236, Percent_Identity=26.271186440678, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788069, Length=235, Percent_Identity=24.6808510638298, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790753, Length=256, Percent_Identity=28.125, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787063, Length=229, Percent_Identity=28.82096069869, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790635, Length=233, Percent_Identity=26.6094420600858, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789170, Length=240, Percent_Identity=25.8333333333333, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28104; Mature: 28104

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIPAERQKKILNLIHQQGIVRITNLVELMGVSHMTIRRDIQKLEEKGKVVSVSGGVQLL
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCHHHH
ERLISEPTRDDKSLLFHQQKSAIGLVAANLIPANATIYLDAGTTTLEIAKQITDRDDLLV
HHHHCCCCCCCHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCHHHHHHHHHCCCCCEEE
ITNDFGIVDYLISNGRCDLIHTGGRVCKENRSSVGELSAQFLRNISIDIAFISTSSWNLQ
EECCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCEE
GLTTPDENKLPVKRAIVQASRRNILVTDSSKYGKVATFLLYALDTLDQIICDKALLINAQ
ECCCCCCCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHEECCH
EKIKEMDIELLLV
HHHHHCCEEEEEC
>Mature Secondary Structure
MLIPAERQKKILNLIHQQGIVRITNLVELMGVSHMTIRRDIQKLEEKGKVVSVSGGVQLL
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCHHHH
ERLISEPTRDDKSLLFHQQKSAIGLVAANLIPANATIYLDAGTTTLEIAKQITDRDDLLV
HHHHCCCCCCCHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCHHHHHHHHHCCCCCEEE
ITNDFGIVDYLISNGRCDLIHTGGRVCKENRSSVGELSAQFLRNISIDIAFISTSSWNLQ
EECCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCEE
GLTTPDENKLPVKRAIVQASRRNILVTDSSKYGKVATFLLYALDTLDQIICDKALLINAQ
ECCCCCCCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHEECCH
EKIKEMDIELLLV
HHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]