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The map label for this gene is rbsC_3 [H]

Identifier: 15603192

GI number: 15603192

Start: 1518818

End: 1519861

Strand: Direct

Name: rbsC_3 [H]

Synonym: PM1327

Alternate gene names: 15603192

Gene position: 1518818-1519861 (Clockwise)

Preceding gene: 15603191

Following gene: 15603193

Centisome position: 67.28

GC content: 39.66

Gene sequence:

>1044_bases
ATGAATAGGTATTGTATGACAAATTTAAGAAAAATTTTCTCAAAATTAGGCATCGGTATCATTTTACTGTTAATGATTAT
TGGTATGTCGTTAAGTTCCGATGTGTTTTTGTCCACGAATAATATTATCAATATCTTATTACAGGTTTCGATTATTTGTG
TCATTTCTGTGGGTATGACCTATGTCATTTTAACCGGTGGCATTGATCTGTCAGTTGGCTCTATTGTCGCACTCAGTGCC
GTTTGTTTAGGGGTTTTTACACATTGGGGAATGGATTGGTTAGGTGAAAATCCTTCCAGCTTTTCTGTCTTAATGATTGT
CATTAGCGCGATTATCGCAACAATTTTTGTTGGTATCCTTTGTGGTTATGTTAATGGATTAGTGATTGTGTATGGTAAAG
TGACGCCCTTTATCACAACATTGGGTATGATGGGGATTGCGAGAGGACTTGCGTTAACCATTTCAGATGGCAAAACTATC
TATAATTTTCCAGATACATTGCGTTTTTTAGGAAATGGGCGTATTGCACTGACGGAAACATTTGCGCTCCCGGTACCCGT
TATTATTGCGTTACTTGTCGTGTTAGTGAGTTTTTACGTGCTAACACAAACGATGTTTGGTCGACAGATTTATGCGTTAG
GCGGAAACCGTGAAGCAGTTCGATTGTCCGGTATTAATATTGAGAAACTTGAAATTAAAGCTTATGTGATTAATGGCGCA
TTAGCGGCAATTGGTGCCATCATTTTAGTTGGACGTTTAAATGCGGCACAGCCTATCGCTGGAAACGGTTATGAATTAGA
TGCTATCGCTGCAACCGTGATAGGCGGGACAAGTTTGATGGGCGGCGTGGGATCGGTGGTCAGTACTTCTATTGGGGCGC
TTATTATGGGGGTGTTACAAAATGGGCTGACGTTATTGAACGTCACCTCGTATTTGCAGCGCTTGATTATTGGTTTAGTG
ATTATTTTAGCGGTATTTTTAGATCAATTACGTCGTGGCGAAGTATCAACACGCCGTTTGAAACGGTTATTTTTTAGAGA
ATAA

Upstream 100 bases:

>100_bases
GATCGTGTTATCGTGATGCGACAAGGTGGGATTGTGCGTGAAGTAAAAGATAAAGCAGAAATGACAGAAGAGAATTTAAT
GCGTTTAATGATTGGTGTAG

Downstream 100 bases:

>100_bases
TGTTTTGTTCAGCAAAGACAAATTTGTCAGCCTAGCTAATGATATGTCAGTGAGCTAGGCTTTTTTATTTTGCCAAATTT
TACTTTTCATCGGTAACGAA

Product: RbsC

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MNRYCMTNLRKIFSKLGIGIILLLMIIGMSLSSDVFLSTNNIINILLQVSIICVISVGMTYVILTGGIDLSVGSIVALSA
VCLGVFTHWGMDWLGENPSSFSVLMIVISAIIATIFVGILCGYVNGLVIVYGKVTPFITTLGMMGIARGLALTISDGKTI
YNFPDTLRFLGNGRIALTETFALPVPVIIALLVVLVSFYVLTQTMFGRQIYALGGNREAVRLSGINIEKLEIKAYVINGA
LAAIGAIILVGRLNAAQPIAGNGYELDAIAATVIGGTSLMGGVGSVVSTSIGALIMGVLQNGLTLLNVTSYLQRLIIGLV
IILAVFLDQLRRGEVSTRRLKRLFFRE

Sequences:

>Translated_347_residues
MNRYCMTNLRKIFSKLGIGIILLLMIIGMSLSSDVFLSTNNIINILLQVSIICVISVGMTYVILTGGIDLSVGSIVALSA
VCLGVFTHWGMDWLGENPSSFSVLMIVISAIIATIFVGILCGYVNGLVIVYGKVTPFITTLGMMGIARGLALTISDGKTI
YNFPDTLRFLGNGRIALTETFALPVPVIIALLVVLVSFYVLTQTMFGRQIYALGGNREAVRLSGINIEKLEIKAYVINGA
LAAIGAIILVGRLNAAQPIAGNGYELDAIAATVIGGTSLMGGVGSVVSTSIGALIMGVLQNGLTLLNVTSYLQRLIIGLV
IILAVFLDQLRRGEVSTRRLKRLFFRE
>Mature_347_residues
MNRYCMTNLRKIFSKLGIGIILLLMIIGMSLSSDVFLSTNNIINILLQVSIICVISVGMTYVILTGGIDLSVGSIVALSA
VCLGVFTHWGMDWLGENPSSFSVLMIVISAIIATIFVGILCGYVNGLVIVYGKVTPFITTLGMMGIARGLALTISDGKTI
YNFPDTLRFLGNGRIALTETFALPVPVIIALLVVLVSFYVLTQTMFGRQIYALGGNREAVRLSGINIEKLEIKAYVINGA
LAAIGAIILVGRLNAAQPIAGNGYELDAIAATVIGGTSLMGGVGSVVSTSIGALIMGVLQNGLTLLNVTSYLQRLIIGLV
IILAVFLDQLRRGEVSTRRLKRLFFRE

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=317, Percent_Identity=43.217665615142, Blast_Score=204, Evalue=9e-54,
Organism=Escherichia coli, GI1790524, Length=325, Percent_Identity=38.7692307692308, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1789992, Length=376, Percent_Identity=32.1808510638298, Blast_Score=164, Evalue=8e-42,
Organism=Escherichia coli, GI145693152, Length=328, Percent_Identity=32.3170731707317, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI1788896, Length=328, Percent_Identity=30.7926829268293, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI87082395, Length=307, Percent_Identity=36.1563517915309, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788471, Length=321, Percent_Identity=36.1370716510903, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1787793, Length=302, Percent_Identity=33.4437086092715, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI145693214, Length=266, Percent_Identity=37.593984962406, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1787794, Length=303, Percent_Identity=28.7128712871287, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37026; Mature: 37026

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYCMTNLRKIFSKLGIGIILLLMIIGMSLSSDVFLSTNNIINILLQVSIICVISVGMT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHE
YVILTGGIDLSVGSIVALSAVCLGVFTHWGMDWLGENPSSFSVLMIVISAIIATIFVGIL
EEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
CGYVNGLVIVYGKVTPFITTLGMMGIARGLALTISDGKTIYNFPDTLRFLGNGRIALTET
HHHHCCEEEEEECHHHHHHHHHHHHHHCCEEEEEECCCEEECCCHHHHHHCCCCEEEEEE
FALPVPVIIALLVVLVSFYVLTQTMFGRQIYALGGNREAVRLSGINIEKLEIKAYVINGA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCEEEEEEEEEEEHHH
LAAIGAIILVGRLNAAQPIAGNGYELDAIAATVIGGTSLMGGVGSVVSTSIGALIMGVLQ
HHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NGLTLLNVTSYLQRLIIGLVIILAVFLDQLRRGEVSTRRLKRLFFRE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNRYCMTNLRKIFSKLGIGIILLLMIIGMSLSSDVFLSTNNIINILLQVSIICVISVGMT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHE
YVILTGGIDLSVGSIVALSAVCLGVFTHWGMDWLGENPSSFSVLMIVISAIIATIFVGIL
EEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
CGYVNGLVIVYGKVTPFITTLGMMGIARGLALTISDGKTIYNFPDTLRFLGNGRIALTET
HHHHCCEEEEEECHHHHHHHHHHHHHHCCEEEEEECCCEEECCCHHHHHHCCCCEEEEEE
FALPVPVIIALLVVLVSFYVLTQTMFGRQIYALGGNREAVRLSGINIEKLEIKAYVINGA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCEEEEEEEEEEEHHH
LAAIGAIILVGRLNAAQPIAGNGYELDAIAATVIGGTSLMGGVGSVVSTSIGALIMGVLQ
HHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NGLTLLNVTSYLQRLIIGLVIILAVFLDQLRRGEVSTRRLKRLFFRE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]