Click here to switch to the map view.

The map label for this gene is rlpB [C]

Identifier: 15603080

GI number: 15603080

Start: 1407714

End: 1408217

Strand: Direct

Name: rlpB [C]

Synonym: PM1215

Alternate gene names: 15603080

Gene position: 1407714-1408217 (Clockwise)

Preceding gene: 15603079

Following gene: 15603081

Centisome position: 62.36

GC content: 39.09

Gene sequence:

>504_bases
ATGTTGAAACAACTCAAAACAATTTTGCTCACAGCAGTTTTTACTTTCCTGACAGCATGTGGCTTTCAATTTCAAAATGG
CGGACTCATTCCGCCTGCATTGCAAACCCTTACGCTTGAAAGTAGCGATCCTTACAGTGAAATGACGTTGACCTTAAGAA
AAGAGTTACAGCTCAATAATATTCATTTAGTCGAGGGACAAGCAAATATTCCCGTATTACGTTTAAATAAAATCACTATG
CATGATCAAGTTGCGTCGATTTTCAAACAAGGTCGTGAAGCAGAAAAAATGCTGATTTTAGAAGTAGAGGCAATGGTAAA
ATTGCCTAATCAAGCTGCGTTCCCGATTTCAACTAAAGTGAATCGCACGTTCTTCGATAACTCGCGCGCAGCCTTAGCAA
AATCTGCCGAAAAAGAAGTGATTTGGCATGATATGCGCGAGCAAGCTGCACGTCAGTTAATTAATAAAATGGTTGCTCTT
CAACATCAAGTTCAGACAAAATAA

Upstream 100 bases:

>100_bases
ACCATCTATGTACCGGGAAAATTATTTAGCTTTGTGGCAAAATAATTCCTAATTTTCTTTGATATTTCCCTCTTCCTAGA
GGGAAATTAAGGATCACAAT

Downstream 100 bases:

>100_bases
TGCAACGGATTTTCACAGAACAATTAGGATCTGCTCTACAAAACAAACTAGCCAAGCTCTATTATTTCGTAGGGCAAGAT
CCGTTACTGTTAAGTGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MLKQLKTILLTAVFTFLTACGFQFQNGGLIPPALQTLTLESSDPYSEMTLTLRKELQLNNIHLVEGQANIPVLRLNKITM
HDQVASIFKQGREAEKMLILEVEAMVKLPNQAAFPISTKVNRTFFDNSRAALAKSAEKEVIWHDMREQAARQLINKMVAL
QHQVQTK

Sequences:

>Translated_167_residues
MLKQLKTILLTAVFTFLTACGFQFQNGGLIPPALQTLTLESSDPYSEMTLTLRKELQLNNIHLVEGQANIPVLRLNKITM
HDQVASIFKQGREAEKMLILEVEAMVKLPNQAAFPISTKVNRTFFDNSRAALAKSAEKEVIWHDMREQAARQLINKMVAL
QHQVQTK
>Mature_167_residues
MLKQLKTILLTAVFTFLTACGFQFQNGGLIPPALQTLTLESSDPYSEMTLTLRKELQLNNIHLVEGQANIPVLRLNKITM
HDQVASIFKQGREAEKMLILEVEAMVKLPNQAAFPISTKVNRTFFDNSRAALAKSAEKEVIWHDMREQAARQLINKMVAL
QHQVQTK

Specific function: Unknown

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786860, Length=163, Percent_Identity=33.7423312883436, Blast_Score=118, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007485 [H]

Pfam domain/function: PF04390 RplB [H]

EC number: NA

Molecular weight: Translated: 18888; Mature: 18888

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQLKTILLTAVFTFLTACGFQFQNGGLIPPALQTLTLESSDPYSEMTLTLRKELQLNN
CHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHEEEECCCCCHHHHHHHHHHHCCCCC
IHLVEGQANIPVLRLNKITMHDQVASIFKQGREAEKMLILEVEAMVKLPNQAAFPISTKV
EEEEECCCCCCEEEEEEEHHHHHHHHHHHCCCHHHHHHHEEHHHHHHCCCCCCCCCCCCC
NRTFFDNSRAALAKSAEKEVIWHDMREQAARQLINKMVALQHQVQTK
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLKQLKTILLTAVFTFLTACGFQFQNGGLIPPALQTLTLESSDPYSEMTLTLRKELQLNN
CHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHEEEECCCCCHHHHHHHHHHHCCCCC
IHLVEGQANIPVLRLNKITMHDQVASIFKQGREAEKMLILEVEAMVKLPNQAAFPISTKV
EEEEECCCCCCEEEEEEEHHHHHHHHHHHCCCHHHHHHHEEHHHHHHCCCCCCCCCCCCC
NRTFFDNSRAALAKSAEKEVIWHDMREQAARQLINKMVALQHQVQTK
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]