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The map label for this gene is exbD [H]

Identifier: 15603052

GI number: 15603052

Start: 1382830

End: 1383219

Strand: Direct

Name: exbD [H]

Synonym: PM1187

Alternate gene names: 15603052

Gene position: 1382830-1383219 (Clockwise)

Preceding gene: 15603051

Following gene: 15603053

Centisome position: 61.26

GC content: 34.36

Gene sequence:

>390_bases
ATGAAAAAGTTTGATGAAATCAACATTATCCCTTTTATTGACATCATGTTGGTACTATTGGCTATCGTTCTGATTACAGC
CTCTTTTATTTCACAAGGTAAAATCCAAGTGAATGTACCAAAAGCAAGTTCAACAGTTGCGTTTCGTTCAGATGATTTAG
CCAAATTGCTGACTATTACGGAAAGCGGTGAAATTTTTTATCACGATAAACCGATTACGATAGAAGCATTGGAACAAGAA
ATCAGTAATTGGGAAAAAGATCAAAAAGTCACCTTGAAGGTAGATGCAAAATCCAGTTTCCAAGATTTCGTTTCTATCAC
TGATATTATGGCTAAAAATGAAATTAAAAATGTCGCTATCGTGACGGTTAAAGAAAAGGCACCTCAATGA

Upstream 100 bases:

>100_bases
GGTGTGTTACAACGGTTTAGGACGTAAAGTCGAAGTTAATCGTTTGAAATGGTTTGCCTTAAATAAGAAAAAAGCCAAAC
AACAAGCATAGGGAGCCGTC

Downstream 100 bases:

>100_bases
TAGATAAAAGTCGTTCTTGCATCGGGTTTGCAATTTCATTGCTTTTTCACGCAAGTTTTGTCTCTTTCCTGTATTGGATT
GTACAAAAAGACGATGACAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MKKFDEINIIPFIDIMLVLLAIVLITASFISQGKIQVNVPKASSTVAFRSDDLAKLLTITESGEIFYHDKPITIEALEQE
ISNWEKDQKVTLKVDAKSSFQDFVSITDIMAKNEIKNVAIVTVKEKAPQ

Sequences:

>Translated_129_residues
MKKFDEINIIPFIDIMLVLLAIVLITASFISQGKIQVNVPKASSTVAFRSDDLAKLLTITESGEIFYHDKPITIEALEQE
ISNWEKDQKVTLKVDAKSSFQDFVSITDIMAKNEIKNVAIVTVKEKAPQ
>Mature_129_residues
MKKFDEINIIPFIDIMLVLLAIVLITASFISQGKIQVNVPKASSTVAFRSDDLAKLLTITESGEIFYHDKPITIEALEQE
ISNWEKDQKVTLKVDAKSSFQDFVSITDIMAKNEIKNVAIVTVKEKAPQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014171 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14455; Mature: 14455

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFDEINIIPFIDIMLVLLAIVLITASFISQGKIQVNVPKASSTVAFRSDDLAKLLTIT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCEEEEEEE
ESGEIFYHDKPITIEALEQEISNWEKDQKVTLKVDAKSSFQDFVSITDIMAKNEIKNVAI
CCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEE
VTVKEKAPQ
EEEECCCCC
>Mature Secondary Structure
MKKFDEINIIPFIDIMLVLLAIVLITASFISQGKIQVNVPKASSTVAFRSDDLAKLLTIT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCCCEEEEEEE
ESGEIFYHDKPITIEALEQEISNWEKDQKVTLKVDAKSSFQDFVSITDIMAKNEIKNVAI
CCCCEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEE
VTVKEKAPQ
EEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7828935; 7542800 [H]