Click here to switch to the map view.

The map label for this gene is ybeY [C]

Identifier: 15602910

GI number: 15602910

Start: 1233407

End: 1233883

Strand: Reverse

Name: ybeY [C]

Synonym: PM1045

Alternate gene names: 15602910

Gene position: 1233883-1233407 (Counterclockwise)

Preceding gene: 15602911

Following gene: 15602909

Centisome position: 54.66

GC content: 42.98

Gene sequence:

>477_bases
ATGAAACAAGTGATAATTGATTTACAACTGGTCTGCGAAAACACGGATAATTTACCGAGTGAAGCACAAATTCAGGCATG
GGCAAATCGTGCGATCCAGCCAGAATTTTCCGATGTTGAAATGACGGTGCGCATTGTGGATGAAGCAGAAAGTCATGACC
TGAATTTGACTTATCGCGGCAAAGATAAGCCAACCAATGTCTTATCCTTTCCGTTTGAATGCCCTGATGAAGTGGAATTA
AGTTTGCTAGGCGATTTAGTCATTTGCCGTCAAGTGGTGGAAAAAGAAGCCGAAGAACAAGGTAAGCCATTAATGGCACA
TTGGGCGCATATGGTGGTGCATGGTTGCTTACATTTACTTGGCTATGATCATATTGAGGACGCCGAAGCAGAGGAAATGG
AAGGGTTAGAAACGGAAATCATGCAGTCTTTGGGTTTTGACGATCCTTATCTGAGCGAAAAAGAAATGCACGGATAA

Upstream 100 bases:

>100_bases
TCGCCGTGCCGAGATCGCGGCACAACGTCGTCAAGAGCGTGCTGAAAAAGACAATATAGAAAAAGTGCGGTCAGAAAATA
CAGTGCATGAGAAAGCATAA

Downstream 100 bases:

>100_bases
AAAGTGCTTTCTTTTTAAACCATTTTATTAAATTGTGGTCAAAGAAGTCTAAAATTTTTGTTAGGCATATAAGATGCCAA
GATGACAGGTTTATCACAGT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKQVIIDLQLVCENTDNLPSEAQIQAWANRAIQPEFSDVEMTVRIVDEAESHDLNLTYRGKDKPTNVLSFPFECPDEVEL
SLLGDLVICRQVVEKEAEEQGKPLMAHWAHMVVHGCLHLLGYDHIEDAEAEEMEGLETEIMQSLGFDDPYLSEKEMHG

Sequences:

>Translated_158_residues
MKQVIIDLQLVCENTDNLPSEAQIQAWANRAIQPEFSDVEMTVRIVDEAESHDLNLTYRGKDKPTNVLSFPFECPDEVEL
SLLGDLVICRQVVEKEAEEQGKPLMAHWAHMVVHGCLHLLGYDHIEDAEAEEMEGLETEIMQSLGFDDPYLSEKEMHG
>Mature_158_residues
MKQVIIDLQLVCENTDNLPSEAQIQAWANRAIQPEFSDVEMTVRIVDEAESHDLNLTYRGKDKPTNVLSFPFECPDEVEL
SLLGDLVICRQVVEKEAEEQGKPLMAHWAHMVVHGCLHLLGYDHIEDAEAEEMEGLETEIMQSLGFDDPYLSEKEMHG

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=156, Percent_Identity=73.7179487179487, Blast_Score=221, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_PASMU (P57900)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245982.1
- ProteinModelPortal:   P57900
- SMR:   P57900
- GeneID:   1244392
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM1045
- NMPDR:   fig|272843.1.peg.1045
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- ProtClustDB:   PRK00016
- BioCyc:   PMUL272843:PM1045-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17951; Mature: 17951

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVIIDLQLVCENTDNLPSEAQIQAWANRAIQPEFSDVEMTVRIVDEAESHDLNLTYRG
CCCEEEEHHEEECCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCEEEECC
KDKPTNVLSFPFECPDEVELSLLGDLVICRQVVEKEAEEQGKPLMAHWAHMVVHGCLHLL
CCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
GYDHIEDAEAEEMEGLETEIMQSLGFDDPYLSEKEMHG
CCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKQVIIDLQLVCENTDNLPSEAQIQAWANRAIQPEFSDVEMTVRIVDEAESHDLNLTYRG
CCCEEEEHHEEECCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCEEEECC
KDKPTNVLSFPFECPDEVELSLLGDLVICRQVVEKEAEEQGKPLMAHWAHMVVHGCLHLL
CCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
GYDHIEDAEAEEMEGLETEIMQSLGFDDPYLSEKEMHG
CCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100