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The map label for this gene is spsC [H]

Identifier: 15602879

GI number: 15602879

Start: 1195053

End: 1196222

Strand: Direct

Name: spsC [H]

Synonym: PM1014

Alternate gene names: 15602879

Gene position: 1195053-1196222 (Clockwise)

Preceding gene: 15602878

Following gene: 15602880

Centisome position: 52.94

GC content: 41.88

Gene sequence:

>1170_bases
ATGCTCAATACACCTTTTGCACCTTGGCCATCCTTTTCAGAACAAGAAATTGATGCCGTCGTCAAAGTACTTCGGTCTAA
TCAAGTCAATTACTGGACAGGACAAGTATGCCGAGAATTTGAAAAAGAATTTGCACACTACACTCAAACAAAGCATGCCA
TTGCGTTGATGAATGGTACAGTTGCACTGGATCTTGCCTTAAAAGCCCTCGACATTAAAGCTGGCGATGATGTGATTGTG
ACTTCTCGCACTTTTCTTGCTTCAGCAAGCTGTATTATCACTGCCGGCGCAAATCCTGTGTTTGCCGATGTTGAGCTTGA
TTCACAAAATATCTCTCGTCGAACTATTGAAGCCGTTTTAACGCCGAATACAAAAGCTATCATCTGTGTACATTTAGCAG
GGCTAATGTGTGATATGGATCCGATTATGGCGCTGGCTCACGAAAGAGGATTGTATGTCATTGAAGACTGTGCTCAAGCT
CATGGCGCAATGTATAAAGGACGTTCCGCAGGTTCCATAGGTCACATTGGTGCCTGGTCATTCTGCCAAGACAAAATCAT
GACAACTGGCGGAGAAGGCGGAATGGTGACTACGAATGATACGGTCCTTTGGAATAAGATGTGGTCCTATAAAGATCATG
GTAAAAGTTTTGACGCAGTTTATCATAAAACACATCCTGCAGGCTTTAAATGGCTTCACGAATCTTTTGGCACCAACTGG
CGCATGATGGAAATTCAAGCGGCGATTGGACGTATTCAACTTACAAAAATGCCAGAATGGACGAAAAAACGAAATCAAAA
TATGCAACGTATTTTGGCCGCATTTGCTGACTCGCCTTATTTTACGCAACATACACTAACACCAGATTATGTTCATGCCG
CCTATAAATGTTACGTACAAGTCAACCCGACAACACTACCTCAAGGCTGGGATCGTGATCGTATCATGCAACATATCAAT
GCATTAGGCGTGCCTTGTTATAGCGGTTCTTGCTCAGAAGTTTATTTAGAAAAAGCATTTGAGCACACCACATGGCGACC
AAATAAACGTTTAGAAAACGCGAAACAATTAGGGGAAACCAGTTTAATGTTTTTAGTCCATCCCACATTAACTGAATCAG
ACATCAGTCGATGTGTGGAAGTGATAAAAACAGTAATTGAACAAATTTAA

Upstream 100 bases:

>100_bases
AGAGTTTGATCAATTACCCGAGGCACAAAAATATATTCATTTTGTTTGCCCTAATAATAAGACTCCAACTCGTTAACCTT
TTACTTTGGAGAAATTTATT

Downstream 100 bases:

>100_bases
ATGGCGTTTAGAACTTATGAATATGCATTATTTAATCACTTCCTTAACACTGCTTTCTAAAACGAATAAAAAGATTTTTT
TATTGGTGTTAGATTTCATT

Product: hypothetical protein

Products: TDP-D-fucosamine; 2-oxoglutarate [C]

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MLNTPFAPWPSFSEQEIDAVVKVLRSNQVNYWTGQVCREFEKEFAHYTQTKHAIALMNGTVALDLALKALDIKAGDDVIV
TSRTFLASASCIITAGANPVFADVELDSQNISRRTIEAVLTPNTKAIICVHLAGLMCDMDPIMALAHERGLYVIEDCAQA
HGAMYKGRSAGSIGHIGAWSFCQDKIMTTGGEGGMVTTNDTVLWNKMWSYKDHGKSFDAVYHKTHPAGFKWLHESFGTNW
RMMEIQAAIGRIQLTKMPEWTKKRNQNMQRILAAFADSPYFTQHTLTPDYVHAAYKCYVQVNPTTLPQGWDRDRIMQHIN
ALGVPCYSGSCSEVYLEKAFEHTTWRPNKRLENAKQLGETSLMFLVHPTLTESDISRCVEVIKTVIEQI

Sequences:

>Translated_389_residues
MLNTPFAPWPSFSEQEIDAVVKVLRSNQVNYWTGQVCREFEKEFAHYTQTKHAIALMNGTVALDLALKALDIKAGDDVIV
TSRTFLASASCIITAGANPVFADVELDSQNISRRTIEAVLTPNTKAIICVHLAGLMCDMDPIMALAHERGLYVIEDCAQA
HGAMYKGRSAGSIGHIGAWSFCQDKIMTTGGEGGMVTTNDTVLWNKMWSYKDHGKSFDAVYHKTHPAGFKWLHESFGTNW
RMMEIQAAIGRIQLTKMPEWTKKRNQNMQRILAAFADSPYFTQHTLTPDYVHAAYKCYVQVNPTTLPQGWDRDRIMQHIN
ALGVPCYSGSCSEVYLEKAFEHTTWRPNKRLENAKQLGETSLMFLVHPTLTESDISRCVEVIKTVIEQI
>Mature_389_residues
MLNTPFAPWPSFSEQEIDAVVKVLRSNQVNYWTGQVCREFEKEFAHYTQTKHAIALMNGTVALDLALKALDIKAGDDVIV
TSRTFLASASCIITAGANPVFADVELDSQNISRRTIEAVLTPNTKAIICVHLAGLMCDMDPIMALAHERGLYVIEDCAQA
HGAMYKGRSAGSIGHIGAWSFCQDKIMTTGGEGGMVTTNDTVLWNKMWSYKDHGKSFDAVYHKTHPAGFKWLHESFGTNW
RMMEIQAAIGRIQLTKMPEWTKKRNQNMQRILAAFADSPYFTQHTLTPDYVHAAYKCYVQVNPTTLPQGWDRDRIMQHIN
ALGVPCYSGSCSEVYLEKAFEHTTWRPNKRLENAKQLGETSLMFLVHPTLTESDISRCVEVIKTVIEQI

Specific function: Involved In Eca Elongation. [C]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI2367285, Length=245, Percent_Identity=35.5102040816327, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI145693159, Length=388, Percent_Identity=29.639175257732, Blast_Score=147, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 43701; Mature: 43701

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNTPFAPWPSFSEQEIDAVVKVLRSNQVNYWTGQVCREFEKEFAHYTQTKHAIALMNGT
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCC
VALDLALKALDIKAGDDVIVTSRTFLASASCIITAGANPVFADVELDSQNISRRTIEAVL
EEEEEEEEEEEECCCCCEEEECHHHHHCCCEEEEECCCCEEEEEEECCCCCCHHEEEEEE
TPNTKAIICVHLAGLMCDMDPIMALAHERGLYVIEDCAQAHGAMYKGRSAGSIGHIGAWS
CCCCCEEEEEEHHHHHCCHHHHHHHHHHCCCEEEHHHHHHHCCEECCCCCCCCCCCCCHH
FCQDKIMTTGGEGGMVTTNDTVLWNKMWSYKDHGKSFDAVYHKTHPAGFKWLHESFGTNW
HHHHHHHCCCCCCCEEECCCEEEEHHHCCHHCCCCCHHHHHCCCCCCHHHHHHHHHCCCE
RMMEIQAAIGRIQLTKMPEWTKKRNQNMQRILAAFADSPYFTQHTLTPDYVHAAYKCYVQ
EEEEEEHHHCEEEEECCCHHHHHHCCHHHHHHHHHCCCCCCEECCCCHHHHEEEEEEEEE
VNPTTLPQGWDRDRIMQHINALGVPCYSGSCSEVYLEKAFEHTTWRPNKRLENAKQLGET
ECCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
SLMFLVHPTLTESDISRCVEVIKTVIEQI
EEEEEEECCCCHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MLNTPFAPWPSFSEQEIDAVVKVLRSNQVNYWTGQVCREFEKEFAHYTQTKHAIALMNGT
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCC
VALDLALKALDIKAGDDVIVTSRTFLASASCIITAGANPVFADVELDSQNISRRTIEAVL
EEEEEEEEEEEECCCCCEEEECHHHHHCCCEEEEECCCCEEEEEEECCCCCCHHEEEEEE
TPNTKAIICVHLAGLMCDMDPIMALAHERGLYVIEDCAQAHGAMYKGRSAGSIGHIGAWS
CCCCCEEEEEEHHHHHCCHHHHHHHHHHCCCEEEHHHHHHHCCEECCCCCCCCCCCCCHH
FCQDKIMTTGGEGGMVTTNDTVLWNKMWSYKDHGKSFDAVYHKTHPAGFKWLHESFGTNW
HHHHHHHCCCCCCCEEECCCEEEEHHHCCHHCCCCCHHHHHCCCCCCHHHHHHHHHCCCE
RMMEIQAAIGRIQLTKMPEWTKKRNQNMQRILAAFADSPYFTQHTLTPDYVHAAYKCYVQ
EEEEEEHHHCEEEEECCCHHHHHHCCHHHHHHHHHCCCCCCEECCCCHHHHEEEEEEEEE
VNPTTLPQGWDRDRIMQHINALGVPCYSGSCSEVYLEKAFEHTTWRPNKRLENAKQLGET
ECCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
SLMFLVHPTLTESDISRCVEVIKTVIEQI
EEEEEEECCCCHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: dTDP-4-dehydro-6-deoxy-D-glucose; L-glutamate [C]

Specific reaction: dTDP-4-dehydro-6-deoxy-D-glucose + L-glutamate = TDP-D-fucosamine + 2-oxoglutarate [C]

General reaction: Carbon-Oxygen Lyases; Hydro-Lyases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]