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The map label for this gene is cydB [C]

Identifier: 15602838

GI number: 15602838

Start: 1144161

End: 1145297

Strand: Reverse

Name: cydB [C]

Synonym: PM0973

Alternate gene names: 15602838

Gene position: 1145297-1144161 (Counterclockwise)

Preceding gene: 15602839

Following gene: 15602837

Centisome position: 50.73

GC content: 39.4

Gene sequence:

>1137_bases
ATGATTGATTATGAAATTCTACGCTTTGTTTGGTGGATCTTGATCGGTGTATTGCTTATTGGTTTTGCAGTAACTGATGG
TTTTGATATGGGTGTTCTAACTTTGTTGCCTTTTGCTGGTAAAAAAGAAGTGGAAAAACGTATCATGATTAACTCCATTG
CACCACACTGGGACGGTAACCAAGTTTGGTTATTAACAGCCGGTGGCGCAATGTTTGCCGCATGGCCGATTGTGTATGCC
ACCTCTTTCTCTGGTTTCTATATCGCCATGATTTTAGTTTTAGCGGCATTATTCTTCCGTCCTGTCGGCTTAGAGTATCG
TGCTAAAATTGATAATCCAACCTGGCGTACATTATGGGATTGGGGATTATTCATTGGTGGTTTTGTCCCTTCGCTAGTTT
TCGGTGTGGCATTTGGTAACTTGTTACAAGGTGTGCCATTTGAATTCAACGAATTATTGCAAGTTAAATACACAGGCTCA
TTCTTTGCATTATTAAATCCATTTGCGTTACTTTGTGGTTTAGTGAGCTTAGCAATGTTAACAACACAAGGTAGTGCTTG
GTTGCAAATGAAAACAACTAGCGAATTACGTCATCGTGCTCGTAGCATTACACAAGCTGGTGCCGTTGCTACAATCATTA
CTTTTGTGCTTGCTGGTGTTTGGTTATATTTCAAAGACGGTTTTGTTGTGACATCTGTGATTGATCATAACGCCCCATCA
ACTCCATTTGGTAAAACTGTGGCGATTGAAGCGGGTGCATGGTTTAATAACTATAAAGACATGCCGATTTTATGGATTTT
CCCTTTACTAGCGGTGGTAAGTGCAGTATTGAACATTTTAGCCTCTAAAGCAGATCGTTCAGGTTTCGCGTTTTTATTCT
CATCCTTAACGATGGCGGGTATTATTTTGACTGCGGGCATTTCTATGTTCCCATTCGTGATGCCATCCATTACGCATCCT
GAATTAAGCTTGTTAATGTGGGATTCTACATCAAGTAAATTGACATTAACCTTAATGCTCGGTTTTGCACTTGTATTTGT
TGTAATTTTACTTGCATACACGATTTGGGCGTATTGGAAAATGTTTGGTCGTCTCGATAGTCAATTTATCGAAGAGAACA
AAAACTCATTATACTAA

Upstream 100 bases:

>100_bases
AAATGTATTTAATGTTCAAATACGGTAGATTAGGACCAAGTTCATTAAAAACAGGTCGTTACTACTTTGAACAATCATCT
AAATAAGCAGGAGCCTGATT

Downstream 100 bases:

>100_bases
GGAGAAATATTATGTTTTATGTCATTTGGGTATTGGGTGTTTTGTTTACGGTGATGTTAGCCGCGGTAATTACTATCGGT
ATTGAGAAAACCGGTAAATT

Product: CydB

Products: NA

Alternate protein names: Cytochrome oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MIDYEILRFVWWILIGVLLIGFAVTDGFDMGVLTLLPFAGKKEVEKRIMINSIAPHWDGNQVWLLTAGGAMFAAWPIVYA
TSFSGFYIAMILVLAALFFRPVGLEYRAKIDNPTWRTLWDWGLFIGGFVPSLVFGVAFGNLLQGVPFEFNELLQVKYTGS
FFALLNPFALLCGLVSLAMLTTQGSAWLQMKTTSELRHRARSITQAGAVATIITFVLAGVWLYFKDGFVVTSVIDHNAPS
TPFGKTVAIEAGAWFNNYKDMPILWIFPLLAVVSAVLNILASKADRSGFAFLFSSLTMAGIILTAGISMFPFVMPSITHP
ELSLLMWDSTSSKLTLTLMLGFALVFVVILLAYTIWAYWKMFGRLDSQFIEENKNSLY

Sequences:

>Translated_378_residues
MIDYEILRFVWWILIGVLLIGFAVTDGFDMGVLTLLPFAGKKEVEKRIMINSIAPHWDGNQVWLLTAGGAMFAAWPIVYA
TSFSGFYIAMILVLAALFFRPVGLEYRAKIDNPTWRTLWDWGLFIGGFVPSLVFGVAFGNLLQGVPFEFNELLQVKYTGS
FFALLNPFALLCGLVSLAMLTTQGSAWLQMKTTSELRHRARSITQAGAVATIITFVLAGVWLYFKDGFVVTSVIDHNAPS
TPFGKTVAIEAGAWFNNYKDMPILWIFPLLAVVSAVLNILASKADRSGFAFLFSSLTMAGIILTAGISMFPFVMPSITHP
ELSLLMWDSTSSKLTLTLMLGFALVFVVILLAYTIWAYWKMFGRLDSQFIEENKNSLY
>Mature_378_residues
MIDYEILRFVWWILIGVLLIGFAVTDGFDMGVLTLLPFAGKKEVEKRIMINSIAPHWDGNQVWLLTAGGAMFAAWPIVYA
TSFSGFYIAMILVLAALFFRPVGLEYRAKIDNPTWRTLWDWGLFIGGFVPSLVFGVAFGNLLQGVPFEFNELLQVKYTGS
FFALLNPFALLCGLVSLAMLTTQGSAWLQMKTTSELRHRARSITQAGAVATIITFVLAGVWLYFKDGFVVTSVIDHNAPS
TPFGKTVAIEAGAWFNNYKDMPILWIFPLLAVVSAVLNILASKADRSGFAFLFSSLTMAGIILTAGISMFPFVMPSITHP
ELSLLMWDSTSSKLTLTLMLGFALVFVVILLAYTIWAYWKMFGRLDSQFIEENKNSLY

Specific function: Probable cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB and CydB. Probable ortholog of the ancestor of AppB/CydB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=63.0606860158311, Blast_Score=495, Evalue=1e-141,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=53.8258575197889, Blast_Score=422, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 42085; Mature: 42085

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDYEILRFVWWILIGVLLIGFAVTDGFDMGVLTLLPFAGKKEVEKRIMINSIAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC
QVWLLTAGGAMFAAWPIVYATSFSGFYIAMILVLAALFFRPVGLEYRAKIDNPTWRTLWD
EEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
WGLFIGGFVPSLVFGVAFGNLLQGVPFEFNELLQVKYTGSFFALLNPFALLCGLVSLAML
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEECCHHHHHHHHHHHHHHHHHHHHH
TTQGSAWLQMKTTSELRHRARSITQAGAVATIITFVLAGVWLYFKDGFVVTSVIDHNAPS
HCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
TPFGKTVAIEAGAWFNNYKDMPILWIFPLLAVVSAVLNILASKADRSGFAFLFSSLTMAG
CCCCCEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
IILTAGISMFPFVMPSITHPELSLLMWDSTSSKLTLTLMLGFALVFVVILLAYTIWAYWK
HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGRLDSQFIEENKNSLY
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIDYEILRFVWWILIGVLLIGFAVTDGFDMGVLTLLPFAGKKEVEKRIMINSIAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC
QVWLLTAGGAMFAAWPIVYATSFSGFYIAMILVLAALFFRPVGLEYRAKIDNPTWRTLWD
EEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
WGLFIGGFVPSLVFGVAFGNLLQGVPFEFNELLQVKYTGSFFALLNPFALLCGLVSLAML
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEECCHHHHHHHHHHHHHHHHHHHHH
TTQGSAWLQMKTTSELRHRARSITQAGAVATIITFVLAGVWLYFKDGFVVTSVIDHNAPS
HCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
TPFGKTVAIEAGAWFNNYKDMPILWIFPLLAVVSAVLNILASKADRSGFAFLFSSLTMAG
CCCCCEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
IILTAGISMFPFVMPSITHPELSLLMWDSTSSKLTLTLMLGFALVFVVILLAYTIWAYWK
HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGRLDSQFIEENKNSLY
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]