Click here to switch to the map view.

The map label for this gene is ybgC [C]

Identifier: 15602836

GI number: 15602836

Start: 1143218

End: 1143628

Strand: Reverse

Name: ybgC [C]

Synonym: PM0971

Alternate gene names: 15602836

Gene position: 1143628-1143218 (Counterclockwise)

Preceding gene: 15602837

Following gene: 15602835

Centisome position: 50.66

GC content: 37.96

Gene sequence:

>411_bases
ATGGTCGCCAATGTATTTAATTTTCCTATTCGTGTTTATTATGAGGATACTGACGCGGGTGGTGTCGTTTACCATGCGCG
CTATTTGCATTTTTTTGAGCGAGCAAGAACAGAATATTTGCGTTGCGCAGGATTTTCACAGCATACACTGTTAAATGAAC
AACAGCTCGCTTTTGTTGTCAAAACAATGAATATTGATTATCGCTATCCAGCAAAGCTCGATAATTTATTAATCGTCGAG
ACGTTAGTCACTGAATTGAAAGGAGCATCGATTTTCTTCACTCAACGATTAAAGAAAGAGGAACAGATTTTATGCGAGGC
TACAGTAAAAGTAGCCTGTGTTGATCTTGGAAAAATGAAACCAATCGCTATTCCTGCAGAGATGAAAGCTGTATTGGTAA
ATGAGTTATAA

Upstream 100 bases:

>100_bases
AGAATCGTATGCTAGACTTGCTTATCATTCATACAAGCTCTAAAATACGCCACCAATTTGTCGAGATGTGACGACGTAAA
TAAACAGAAGGAATAGAACA

Downstream 100 bases:

>100_bases
AACCTTTTGGAGTATGTAATGACTGCAGATTTGAACTTTTTAGAATTATTTCTAAAAGCCAGTATCGTTGTTCAATTTGT
TATTGTAATTTTAATAATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MVANVFNFPIRVYYEDTDAGGVVYHARYLHFFERARTEYLRCAGFSQHTLLNEQQLAFVVKTMNIDYRYPAKLDNLLIVE
TLVTELKGASIFFTQRLKKEEQILCEATVKVACVDLGKMKPIAIPAEMKAVLVNEL

Sequences:

>Translated_136_residues
MVANVFNFPIRVYYEDTDAGGVVYHARYLHFFERARTEYLRCAGFSQHTLLNEQQLAFVVKTMNIDYRYPAKLDNLLIVE
TLVTELKGASIFFTQRLKKEEQILCEATVKVACVDLGKMKPIAIPAEMKAVLVNEL
>Mature_136_residues
MVANVFNFPIRVYYEDTDAGGVVYHARYLHFFERARTEYLRCAGFSQHTLLNEQQLAFVVKTMNIDYRYPAKLDNLLIVE
TLVTELKGASIFFTQRLKKEEQILCEATVKVACVDLGKMKPIAIPAEMKAVLVNEL

Specific function: Unknown

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=131, Percent_Identity=52.6717557251908, Blast_Score=139, Evalue=7e-35,
Organism=Escherichia coli, GI1786647, Length=112, Percent_Identity=34.8214285714286, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15609; Mature: 15609

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS01328 4HBCOA_THIOESTERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVANVFNFPIRVYYEDTDAGGVVYHARYLHFFERARTEYLRCAGFSQHTLLNEQQLAFVV
CCCCEEECCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHEEEEE
KTMNIDYRYPAKLDNLLIVETLVTELKGASIFFTQRLKKEEQILCEATVKVACVDLGKMK
EEECCCEECCCCCCCEEHHHHHHHHHCCCEEEEHHHHCHHHHHHHHHHHEEEEEECCCCC
PIAIPAEMKAVLVNEL
CEEECHHHHHEEECCC
>Mature Secondary Structure
MVANVFNFPIRVYYEDTDAGGVVYHARYLHFFERARTEYLRCAGFSQHTLLNEQQLAFVV
CCCCEEECCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHEEEEE
KTMNIDYRYPAKLDNLLIVETLVTELKGASIFFTQRLKKEEQILCEATVKVACVDLGKMK
EEECCCEECCCCCCCEEHHHHHHHHHCCCEEEEHHHHCHHHHHHHHHHHEEEEEECCCCC
PIAIPAEMKAVLVNEL
CEEECHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]