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The map label for this gene is msmB [H]

Identifier: 15602520

GI number: 15602520

Start: 758088

End: 758297

Strand: Reverse

Name: msmB [H]

Synonym: PM0655

Alternate gene names: 15602520

Gene position: 758297-758088 (Counterclockwise)

Preceding gene: 15602522

Following gene: 15602519

Centisome position: 33.59

GC content: 39.05

Gene sequence:

>210_bases
ATGTCTAAATTAAACGGTACAGTAAAATGGTTCAACTCTGATAAAGGTTTTGGTTTCATCACGCCAGCAGACGGCGGTAA
AGATCTTTTCGTTCATTTTTCAGGTATCATCGGTTCTAACTACAGAACATTAAATGAAGGTGACCGCGTAGAATACAGCG
TTCAAGATTCACAACGTGGACCTTCAGCGATTGATGTAAAAGCAATCTAA

Upstream 100 bases:

>100_bases
CTTGAAAAGCACTCTTACTCATCTTTATTTAAGTAACAGTTATTAGCACTACGCTTGTTTCAAGCATAATTTTAAATTTT
ATCAATAGAAGGAAGACAAC

Downstream 100 bases:

>100_bases
GTTTTTATCAGCGTATAAATAAGCCTCTTACTTTTTAGTAAGAGGCTTTTTCTTTCATTATGTCCATGACAAAATGTTTA
AATACTTTGATACCTTTCTC

Product: MsmB

Products: NA

Alternate protein names: CSP-C [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKLNGTVKWFNSDKGFGFITPADGGKDLFVHFSGIIGSNYRTLNEGDRVEYSVQDSQRGPSAIDVKAI

Sequences:

>Translated_69_residues
MSKLNGTVKWFNSDKGFGFITPADGGKDLFVHFSGIIGSNYRTLNEGDRVEYSVQDSQRGPSAIDVKAI
>Mature_68_residues
SKLNGTVKWFNSDKGFGFITPADGGKDLFVHFSGIIGSNYRTLNEGDRVEYSVQDSQRGPSAIDVKAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=62.3188405797101, Blast_Score=100, Evalue=2e-23,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=60, Blast_Score=93, Evalue=4e-21,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=57.9710144927536, Blast_Score=90, Evalue=2e-20,
Organism=Escherichia coli, GI1787839, Length=65, Percent_Identity=58.4615384615385, Blast_Score=88, Evalue=9e-20,
Organism=Escherichia coli, GI1787834, Length=68, Percent_Identity=51.4705882352941, Blast_Score=85, Evalue=8e-19,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=52.2388059701493, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1787107, Length=58, Percent_Identity=51.7241379310345, Blast_Score=66, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=47.6190476190476, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7540; Mature: 7409

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLNGTVKWFNSDKGFGFITPADGGKDLFVHFSGIIGSNYRTLNEGDRVEYSVQDSQRG
CCCCCCEEEEEECCCCCEEEECCCCCCEEEEEEECEECCCEEECCCCCEEEEEECCCCCC
PSAIDVKAI
CCEEEEEEC
>Mature Secondary Structure 
SKLNGTVKWFNSDKGFGFITPADGGKDLFVHFSGIIGSNYRTLNEGDRVEYSVQDSQRG
CCCCCEEEEEECCCCCEEEECCCCCCEEEEEEECEECCCEEECCCCCEEEEEECCCCCC
PSAIDVKAI
CCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12384590; 12704152 [H]