Click here to switch to the map view.

The map label for this gene is ydgJ [H]

Identifier: 15602517

GI number: 15602517

Start: 754708

End: 755760

Strand: Direct

Name: ydgJ [H]

Synonym: PM0652

Alternate gene names: 15602517

Gene position: 754708-755760 (Clockwise)

Preceding gene: 15602516

Following gene: 15602521

Centisome position: 33.43

GC content: 38.46

Gene sequence:

>1053_bases
ATGTCGAAGATCATTCATGTTGGTATTGCAGGTTTTGGTATGTCAGCCAAAACTTTCCATACTCCTTTTTTACATCAAGA
TCCCCGTTTCTGTATCCATAAAGTCTTTGAGCGACAAAGCGACAAAGCCAAATCAATTTATCCATACATCACGACTGTTC
GCGATTTTACACAGTTATTAGAGGAGGATATTGATTTAGTTCTTATCACTACACCTAACCAAACCCACTATGACTTCGCT
AAAAAAGCCATATTAGCAGGGAAACACGTTATTGTTGAAAAGCCACTTGCTATCACCGCGCAACAAGCTGAGGAATTAGA
CGTTTTAGCACAAAAACATCACGTCATGTTATCGGTGTATCAAAATCGTCGTTGGGATAGCGGTGCCTTAACGGTGAAAA
AACTCATCGCAGAAAACACGCTGGGTGAAATTGTCGAATATGAAATTCGCTATGAACGCTATAGTCCAAGCAAAAACAAA
AAAGCATGGAAGGAAACAGGCGAATTAGGAACAGGATTGGTTTATGATTTAGGCGTACATTTGATTGATGAAGTTCTTGA
CCTCTTTGGTATGCCCAAGGCACTTTTCGCAGATGTCACTAAACAAAATCCAGAAAGTGGTAGCGATGACAGTTTTCGTA
TTACTTTTTATTATGCTGATCATAAAAAAGTGACGTTGTCATCAACGAAATATGCCAGAGAACCAGCACCTCATATTATT
TTACAAGGTAAACTGGGCTCATACATCAAACCTAAATTAGATAATCAAGAAGCACTACTCATGGCGGGTGTACAGCCAAA
AGGAGATTGGAATAAAGAATCAGAACAAGATTGGGGCATTTTACATACTGAAATAGACGGTCTTATTGTACGTCAAAAAC
TTGAGCCTATCTCTGGTAATTATCAAGCGTACTATGACAATATTTATGCGGTTCTTACTAAAAATGCCCCACTTCTAGTG
ACCGCGAAACAAGCCACAACAGTACTCAAACTTATCGAAAAAGTATATGAAAGTGCCGCGCTTGGGCAAAAAATTTACTT
AGTAAATCAATAA

Upstream 100 bases:

>100_bases
TCAGCCTGACTATTGCCGCTACACTGTTGATGATCAGAATGCGCAAAATCCAAGCTCAACCAGATGCCATTTTATTTGCT
AAACTTGAGAAATTAAAATA

Downstream 100 bases:

>100_bases
AAAATATCTGCTGAATAGGTTGTTTTATTAACATTAAAATAGCCTATTTTCTTATCGTTACACTTTATTTAAAAAATAAA
AAACGGTGATAAACATTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MSKIIHVGIAGFGMSAKTFHTPFLHQDPRFCIHKVFERQSDKAKSIYPYITTVRDFTQLLEEDIDLVLITTPNQTHYDFA
KKAILAGKHVIVEKPLAITAQQAEELDVLAQKHHVMLSVYQNRRWDSGALTVKKLIAENTLGEIVEYEIRYERYSPSKNK
KAWKETGELGTGLVYDLGVHLIDEVLDLFGMPKALFADVTKQNPESGSDDSFRITFYYADHKKVTLSSTKYAREPAPHII
LQGKLGSYIKPKLDNQEALLMAGVQPKGDWNKESEQDWGILHTEIDGLIVRQKLEPISGNYQAYYDNIYAVLTKNAPLLV
TAKQATTVLKLIEKVYESAALGQKIYLVNQ

Sequences:

>Translated_350_residues
MSKIIHVGIAGFGMSAKTFHTPFLHQDPRFCIHKVFERQSDKAKSIYPYITTVRDFTQLLEEDIDLVLITTPNQTHYDFA
KKAILAGKHVIVEKPLAITAQQAEELDVLAQKHHVMLSVYQNRRWDSGALTVKKLIAENTLGEIVEYEIRYERYSPSKNK
KAWKETGELGTGLVYDLGVHLIDEVLDLFGMPKALFADVTKQNPESGSDDSFRITFYYADHKKVTLSSTKYAREPAPHII
LQGKLGSYIKPKLDNQEALLMAGVQPKGDWNKESEQDWGILHTEIDGLIVRQKLEPISGNYQAYYDNIYAVLTKNAPLLV
TAKQATTVLKLIEKVYESAALGQKIYLVNQ
>Mature_349_residues
SKIIHVGIAGFGMSAKTFHTPFLHQDPRFCIHKVFERQSDKAKSIYPYITTVRDFTQLLEEDIDLVLITTPNQTHYDFAK
KAILAGKHVIVEKPLAITAQQAEELDVLAQKHHVMLSVYQNRRWDSGALTVKKLIAENTLGEIVEYEIRYERYSPSKNKK
AWKETGELGTGLVYDLGVHLIDEVLDLFGMPKALFADVTKQNPESGSDDSFRITFYYADHKKVTLSSTKYAREPAPHIIL
QGKLGSYIKPKLDNQEALLMAGVQPKGDWNKESEQDWGILHTEIDGLIVRQKLEPISGNYQAYYDNIYAVLTKNAPLLVT
AKQATTVLKLIEKVYESAALGQKIYLVNQ

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=341, Percent_Identity=38.41642228739, Blast_Score=227, Evalue=1e-60,
Organism=Escherichia coli, GI1789848, Length=342, Percent_Identity=33.3333333333333, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI87082405, Length=236, Percent_Identity=25.4237288135593, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787574, Length=195, Percent_Identity=26.1538461538462, Blast_Score=65, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6323975, Length=216, Percent_Identity=26.8518518518519, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24581117, Length=191, Percent_Identity=30.3664921465969, Blast_Score=68, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 39641; Mature: 39510

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIIHVGIAGFGMSAKTFHTPFLHQDPRFCIHKVFERQSDKAKSIYPYITTVRDFTQLL
CCCEEEEEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
EEDIDLVLITTPNQTHYDFAKKAILAGKHVIVEKPLAITAQQAEELDVLAQKHHVMLSVY
HCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCEEEHHHHHHHHHHHHHHHHEEEEH
QNRRWDSGALTVKKLIAENTLGEIVEYEIRYERYSPSKNKKAWKETGELGTGLVYDLGVH
HCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHH
LIDEVLDLFGMPKALFADVTKQNPESGSDDSFRITFYYADHKKVTLSSTKYAREPAPHII
HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCEEEECCCHHCCCCCCEEE
LQGKLGSYIKPKLDNQEALLMAGVQPKGDWNKESEQDWGILHTEIDGLIVRQKLEPISGN
EECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCEEEEHHCCCCCCC
YQAYYDNIYAVLTKNAPLLVTAKQATTVLKLIEKVYESAALGQKIYLVNQ
CEEEECCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECC
>Mature Secondary Structure 
SKIIHVGIAGFGMSAKTFHTPFLHQDPRFCIHKVFERQSDKAKSIYPYITTVRDFTQLL
CCEEEEEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
EEDIDLVLITTPNQTHYDFAKKAILAGKHVIVEKPLAITAQQAEELDVLAQKHHVMLSVY
HCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCEEEHHHHHHHHHHHHHHHHEEEEH
QNRRWDSGALTVKKLIAENTLGEIVEYEIRYERYSPSKNKKAWKETGELGTGLVYDLGVH
HCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHH
LIDEVLDLFGMPKALFADVTKQNPESGSDDSFRITFYYADHKKVTLSSTKYAREPAPHII
HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCEEEECCCHHCCCCCCEEE
LQGKLGSYIKPKLDNQEALLMAGVQPKGDWNKESEQDWGILHTEIDGLIVRQKLEPISGN
EECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEHHCCEEEEHHCCCCCCC
YQAYYDNIYAVLTKNAPLLVTAKQATTVLKLIEKVYESAALGQKIYLVNQ
CEEEECCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]