| Definition | Pasteurella multocida subsp. multocida str. Pm70, complete genome. |
|---|---|
| Accession | NC_002663 |
| Length | 2,257,487 |
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The map label for this gene is pheT
Identifier: 15602494
GI number: 15602494
Start: 730650
End: 733037
Strand: Reverse
Name: pheT
Synonym: PM0629
Alternate gene names: 15602494
Gene position: 733037-730650 (Counterclockwise)
Preceding gene: 15602495
Following gene: 15602493
Centisome position: 32.47
GC content: 42.25
Gene sequence:
>2388_bases ATGAAATTTAGTGAATCATGGGTGCGTGAATGGGTAAATCCCGCTATTAGCACAGCGCAATTATGCGATCAAATCACGAT GTTAGGTTTAGAAGTGGACGGCGTAGAAAAGGTCGCGGGTGATTTTTCGGGAGTGGTTGTCGGTGAGGTAGTGGAATGCG CCCAACATCCTGATGCCGATAAATTACGTGTGACCAAAGTTAATGTTGGTGGTGATCGCCTATTAGATATTGTGTGTGGT GCACCAAATTGTCGTCAAGGCTTAAAAGTGGCTTGTGCGACAGAAGGGGCTGTTTTACCGGGTGACTTCAAAATCAAGAA AACCAAATTACGTGGTCAACCTTCAGAAGGTATGCTTTGCTCATTCAGCGAATTAGGTATTGATGTGGAATCCAGCGGTA TCATTGAACTACCACAAAATGCGCCAGTCGGCACTAATCTACGTGATTATTTAACCTTAGATGATAATACGGTAGAAATT AGCTTAACCCCAAACCGGGCAGACTGTTTAAGTATCGCAGGTATTGCGCGTGAAATCGGTGTCGTCAATAAACTGGCTGT TAATACACCGCACTTTGAATCAGTGAAAGCGACAATTACTGATAAAGTCGATATTCAACTGCATGCGCCTGAAGCGTGCC CACGTTATTTATTACGTGTAGTGAAAAATGTCAATGTGCAAGCGCCATCACCAATGTGGTTACAAGAAAAACTTCGCCGT TGTGGGATTCGCTCTATTGATCCAGTAGTCGATGTAACTAACTATATTTTACTTGAACTGGGTCAACCGATGCATGCATT TGATGCAGCCAAAGTCGCTCAGCCAGTACAAGTCCGTATGGCAAAATCAGGTGAAGCGCTCGTGCTTTTAGACGGTTCTA CAGCAAAATTAAAAGATAACACTTTATTAATTGCGGACCAAAATGGACCATTAGCGATGGCGGGGATTTTTGGTGGACAA GCCAGTGGGGTAAATGCAGAAACTAAAGACATTATTTTGGAAGCTGCTTTCTTTGCACCGTTAGCCATTGCTGGTCGAGC AAGACAATATGGCTTACATACCGATTCTTCTCATCGTTTCGAACGGGGGGTTGATTTTGAATTACAGCGTCAAGCGATGG AAAGAGCAACAGCCTTGTTAGTGGAAATCTGTGGTGGGGAAGTCGGTGACATTTGTGAAGTCGCTAGTGACGCCTTTTTA CCGAAACTGAACCAAGTGAGTTTACGTCGTGAAAAGTTAGATGCCTTATTAGGTCACCATATTGAAACAGAAACCGTCAC GGATATTTTAACGCGCCTTGGCTTACAAGTGAGCTATGCTAACGATGTATGGCAAGTGACATCAGCAAGTTGGCGTTTTG ATATTGAAATCGAAGAAGATTTAGTGGAAGAAATCGCACGTATTTATGGTTACAACAGTATTCCAAACAAGGCGCCATTG GCACATTTACGTATGCGCGAGCATAAAGAAGCGGATTTAGATTTGGCCCGAATTAAAACTGCACTGGTTGATGCCGATTA CCAAGAGGCGATTACTTATAGTTTCGTTGATCCAAAAATACAAAGCGTTTTACATCCACAACAAGATGCACTGGTCTTAC CAAATCCAATTTCAGTGGAAATGTCCGCCATGCGTTTATCCCTATTAAGTGGTTTGTTAGGCGCAGTACAGTATAACCAA AATCGTCAGCAAACCCGTGTTCGCTTATTTGAAACAGGTTTACGCTTTATTCCAGACACGCAGGCCGAATTCGGCGTACG TCAAGAATTTGTTTTAGCGGCTGTGATGACAGGTAATAAAAAAGCAGAACACTGGGCAGGTAAAGCCGAAAGTGTCGATT TCTTTGACCTAAAAGGGGATTTAGAAAGCATTTTATCTTTAACAGGGACTAGAAATTTGGTTAAATTTGTAGCAAAATCA TATCCAGCATTACATCCTGGTCAATCTGCGGCCATCATGTTAAATGGTGAAGAAATTGGTTTTATTGGTACACTTCATCC AAATGCCGCGAAACAACTGGGTTTAAATGGAAAAACAGTGGTATTTGAGATTCTTTGGCAAGCGATTGCAACACGTCAAG TAGTGCAAGCAAAAGAGATTTCACGTTTTCCTGCAAATCGCCGAGATTTAGCTATCGTTGTTGCTGAGAGTGTTGCAGCA AGCGATGTGCTTGACGCGTGTCGAGAGGTTGCTGGCGAAACATTAACTCAAGTTAACCTGTTCGATGTCTATCAAGGCAA TGGTGTGGCTGAAGGCCACAAGAGTTTAGCGATTAGTTTGATTATTCAAGATAATGAAAAAACTCTTGAGGAAGATGATA TCAACGCAGTGGTTTCTGTTGTATTGTCTGAGTTAAAACAACGTTTTAATGCTTATTTGAGAGATTAA
Upstream 100 bases:
>100_bases CCCGTTGGTACGTATCAGTTAGAACTCCAATTTAATGATATTGTGTTTAAAGGATTAGCATTCCAAATTTTAAAATAGAA AGAATATAGAGAGTAAATAG
Downstream 100 bases:
>100_bases ATTATGACACTGACCAAAGTAGAACTCGCAGACAATTTAATTGAAAAACTTCATTTAAATAAACGTGATGCGAAAGAATT AGTGGAAAACTTTTTTGAAG
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS
Number of amino acids: Translated: 795; Mature: 795
Protein sequence:
>795_residues MKFSESWVREWVNPAISTAQLCDQITMLGLEVDGVEKVAGDFSGVVVGEVVECAQHPDADKLRVTKVNVGGDRLLDIVCG APNCRQGLKVACATEGAVLPGDFKIKKTKLRGQPSEGMLCSFSELGIDVESSGIIELPQNAPVGTNLRDYLTLDDNTVEI SLTPNRADCLSIAGIAREIGVVNKLAVNTPHFESVKATITDKVDIQLHAPEACPRYLLRVVKNVNVQAPSPMWLQEKLRR CGIRSIDPVVDVTNYILLELGQPMHAFDAAKVAQPVQVRMAKSGEALVLLDGSTAKLKDNTLLIADQNGPLAMAGIFGGQ ASGVNAETKDIILEAAFFAPLAIAGRARQYGLHTDSSHRFERGVDFELQRQAMERATALLVEICGGEVGDICEVASDAFL PKLNQVSLRREKLDALLGHHIETETVTDILTRLGLQVSYANDVWQVTSASWRFDIEIEEDLVEEIARIYGYNSIPNKAPL AHLRMREHKEADLDLARIKTALVDADYQEAITYSFVDPKIQSVLHPQQDALVLPNPISVEMSAMRLSLLSGLLGAVQYNQ NRQQTRVRLFETGLRFIPDTQAEFGVRQEFVLAAVMTGNKKAEHWAGKAESVDFFDLKGDLESILSLTGTRNLVKFVAKS YPALHPGQSAAIMLNGEEIGFIGTLHPNAAKQLGLNGKTVVFEILWQAIATRQVVQAKEISRFPANRRDLAIVVAESVAA SDVLDACREVAGETLTQVNLFDVYQGNGVAEGHKSLAISLIIQDNEKTLEEDDINAVVSVVLSELKQRFNAYLRD
Sequences:
>Translated_795_residues MKFSESWVREWVNPAISTAQLCDQITMLGLEVDGVEKVAGDFSGVVVGEVVECAQHPDADKLRVTKVNVGGDRLLDIVCG APNCRQGLKVACATEGAVLPGDFKIKKTKLRGQPSEGMLCSFSELGIDVESSGIIELPQNAPVGTNLRDYLTLDDNTVEI SLTPNRADCLSIAGIAREIGVVNKLAVNTPHFESVKATITDKVDIQLHAPEACPRYLLRVVKNVNVQAPSPMWLQEKLRR CGIRSIDPVVDVTNYILLELGQPMHAFDAAKVAQPVQVRMAKSGEALVLLDGSTAKLKDNTLLIADQNGPLAMAGIFGGQ ASGVNAETKDIILEAAFFAPLAIAGRARQYGLHTDSSHRFERGVDFELQRQAMERATALLVEICGGEVGDICEVASDAFL PKLNQVSLRREKLDALLGHHIETETVTDILTRLGLQVSYANDVWQVTSASWRFDIEIEEDLVEEIARIYGYNSIPNKAPL AHLRMREHKEADLDLARIKTALVDADYQEAITYSFVDPKIQSVLHPQQDALVLPNPISVEMSAMRLSLLSGLLGAVQYNQ NRQQTRVRLFETGLRFIPDTQAEFGVRQEFVLAAVMTGNKKAEHWAGKAESVDFFDLKGDLESILSLTGTRNLVKFVAKS YPALHPGQSAAIMLNGEEIGFIGTLHPNAAKQLGLNGKTVVFEILWQAIATRQVVQAKEISRFPANRRDLAIVVAESVAA SDVLDACREVAGETLTQVNLFDVYQGNGVAEGHKSLAISLIIQDNEKTLEEDDINAVVSVVLSELKQRFNAYLRD >Mature_795_residues MKFSESWVREWVNPAISTAQLCDQITMLGLEVDGVEKVAGDFSGVVVGEVVECAQHPDADKLRVTKVNVGGDRLLDIVCG APNCRQGLKVACATEGAVLPGDFKIKKTKLRGQPSEGMLCSFSELGIDVESSGIIELPQNAPVGTNLRDYLTLDDNTVEI SLTPNRADCLSIAGIAREIGVVNKLAVNTPHFESVKATITDKVDIQLHAPEACPRYLLRVVKNVNVQAPSPMWLQEKLRR CGIRSIDPVVDVTNYILLELGQPMHAFDAAKVAQPVQVRMAKSGEALVLLDGSTAKLKDNTLLIADQNGPLAMAGIFGGQ ASGVNAETKDIILEAAFFAPLAIAGRARQYGLHTDSSHRFERGVDFELQRQAMERATALLVEICGGEVGDICEVASDAFL PKLNQVSLRREKLDALLGHHIETETVTDILTRLGLQVSYANDVWQVTSASWRFDIEIEEDLVEEIARIYGYNSIPNKAPL AHLRMREHKEADLDLARIKTALVDADYQEAITYSFVDPKIQSVLHPQQDALVLPNPISVEMSAMRLSLLSGLLGAVQYNQ NRQQTRVRLFETGLRFIPDTQAEFGVRQEFVLAAVMTGNKKAEHWAGKAESVDFFDLKGDLESILSLTGTRNLVKFVAKS YPALHPGQSAAIMLNGEEIGFIGTLHPNAAKQLGLNGKTVVFEILWQAIATRQVVQAKEISRFPANRRDLAIVVAESVAA SDVLDACREVAGETLTQVNLFDVYQGNGVAEGHKSLAISLIIQDNEKTLEEDDINAVVSVVLSELKQRFNAYLRD
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain
Homologues:
Organism=Escherichia coli, GI1788006, Length=795, Percent_Identity=66.0377358490566, Blast_Score=1079, Evalue=0.0, Organism=Drosophila melanogaster, GI21355211, Length=555, Percent_Identity=23.6036036036036, Blast_Score=82, Evalue=1e-15,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYFB_PASMU (P57859)
Other databases:
- EMBL: AE004439 - RefSeq: NP_245566.1 - ProteinModelPortal: P57859 - SMR: P57859 - GeneID: 1243976 - GenomeReviews: AE004439_GR - KEGG: pmu:PM0629 - NMPDR: fig|272843.1.peg.629 - HOGENOM: HBG399638 - OMA: ADKLRVC - ProtClustDB: PRK00629 - BioCyc: PMUL272843:PM0629-MONOMER - BRENDA: 6.1.1.20 - GO: GO:0005737 - HAMAP: MF_00283 - InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 - Gene3D: G3DSA:3.50.40.10 - Gene3D: G3DSA:3.30.56.20 - Gene3D: G3DSA:3.30.70.380 - Gene3D: G3DSA:2.40.50.140 - SMART: SM00873 - SMART: SM00874 - SMART: SM00896 - TIGRFAMs: TIGR00472
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind; SSF56037 B3_4; SSF54991 Fdx_AntiC_bd; SSF50249 Nucleic_acid_OB; SSF46955 Putativ_DNA_bind
EC number: =6.1.1.20
Molecular weight: Translated: 86927; Mature: 86927
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS51483 B5; PS51447 FDX_ACB; PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFSESWVREWVNPAISTAQLCDQITMLGLEVDGVEKVAGDFSGVVVGEVVECAQHPDAD CCCCHHHHHHHHCHHHHHHHHHHHHHHEEEEECCHHHHHCCCCCHHHHHHHHHHCCCCCC KLRVTKVNVGGDRLLDIVCGAPNCRQGLKVACATEGAVLPGDFKIKKTKLRGQPSEGMLC CEEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCEE SFSELGIDVESSGIIELPQNAPVGTNLRDYLTLDDNTVEISLTPNRADCLSIAGIAREIG EHHHHCCEECCCCCEECCCCCCCCCCCHHEEEECCCEEEEEECCCHHHHHHHHHHHHHHC VVNKLAVNTPHFESVKATITDKVDIQLHAPEACPRYLLRVVKNVNVQAPSPMWLQEKLRR CHHHHCCCCCCCCCEEEEEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH CGIRSIDPVVDVTNYILLELGQPMHAFDAAKVAQPVQVRMAKSGEALVLLDGSTAKLKDN CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCEECCC TLLIADQNGPLAMAGIFGGQASGVNAETKDIILEAAFFAPLAIAGRARQYGLHTDSSHRF EEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHH ERGVDFELQRQAMERATALLVEICGGEVGDICEVASDAFLPKLNQVSLRREKLDALLGHH HCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC IETETVTDILTRLGLQVSYANDVWQVTSASWRFDIEIEEDLVEEIARIYGYNSIPNKAPL CCHHHHHHHHHHHCCEEEECCCEEEECCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCH AHLRMREHKEADLDLARIKTALVDADYQEAITYSFVDPKIQSVLHPQQDALVLPNPISVE HHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHEEEECCHHHHHHCCCCCCCEECCCCCCHH MSAMRLSLLSGLLGAVQYNQNRQQTRVRLFETGLRFIPDTQAEFGVRQEFVLAAVMTGNK HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHEEEECCCCC KAEHWAGKAESVDFFDLKGDLESILSLTGTRNLVKFVAKSYPALHPGQSAAIMLNGEEIG CHHHHCCCCCCCEEEECCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCEEEEECCCCEE FIGTLHPNAAKQLGLNGKTVVFEILWQAIATRQVVQAKEISRFPANRRDLAIVVAESVAA EEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHH SDVLDACREVAGETLTQVNLFDVYQGNGVAEGHKSLAISLIIQDNEKTLEEDDINAVVSV HHHHHHHHHHHCCHHHEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHH VLSELKQRFNAYLRD HHHHHHHHHHHHCCC >Mature Secondary Structure MKFSESWVREWVNPAISTAQLCDQITMLGLEVDGVEKVAGDFSGVVVGEVVECAQHPDAD CCCCHHHHHHHHCHHHHHHHHHHHHHHEEEEECCHHHHHCCCCCHHHHHHHHHHCCCCCC KLRVTKVNVGGDRLLDIVCGAPNCRQGLKVACATEGAVLPGDFKIKKTKLRGQPSEGMLC CEEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCEE SFSELGIDVESSGIIELPQNAPVGTNLRDYLTLDDNTVEISLTPNRADCLSIAGIAREIG EHHHHCCEECCCCCEECCCCCCCCCCCHHEEEECCCEEEEEECCCHHHHHHHHHHHHHHC VVNKLAVNTPHFESVKATITDKVDIQLHAPEACPRYLLRVVKNVNVQAPSPMWLQEKLRR CHHHHCCCCCCCCCEEEEEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH CGIRSIDPVVDVTNYILLELGQPMHAFDAAKVAQPVQVRMAKSGEALVLLDGSTAKLKDN CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCEECCC TLLIADQNGPLAMAGIFGGQASGVNAETKDIILEAAFFAPLAIAGRARQYGLHTDSSHRF EEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHH ERGVDFELQRQAMERATALLVEICGGEVGDICEVASDAFLPKLNQVSLRREKLDALLGHH HCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC IETETVTDILTRLGLQVSYANDVWQVTSASWRFDIEIEEDLVEEIARIYGYNSIPNKAPL CCHHHHHHHHHHHCCEEEECCCEEEECCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCCCH AHLRMREHKEADLDLARIKTALVDADYQEAITYSFVDPKIQSVLHPQQDALVLPNPISVE HHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHEEEECCHHHHHHCCCCCCCEECCCCCCHH MSAMRLSLLSGLLGAVQYNQNRQQTRVRLFETGLRFIPDTQAEFGVRQEFVLAAVMTGNK HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHEEEECCCCC KAEHWAGKAESVDFFDLKGDLESILSLTGTRNLVKFVAKSYPALHPGQSAAIMLNGEEIG CHHHHCCCCCCCEEEECCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCEEEEECCCCEE FIGTLHPNAAKQLGLNGKTVVFEILWQAIATRQVVQAKEISRFPANRRDLAIVVAESVAA EEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHH SDVLDACREVAGETLTQVNLFDVYQGNGVAEGHKSLAISLIIQDNEKTLEEDDINAVVSV HHHHHHHHHHHCCHHHEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHH VLSELKQRFNAYLRD HHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11248100