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The map label for this gene is xseB

Identifier: 15602399

GI number: 15602399

Start: 611313

End: 611558

Strand: Reverse

Name: xseB

Synonym: PM0534

Alternate gene names: 15602399

Gene position: 611558-611313 (Counterclockwise)

Preceding gene: 15602401

Following gene: 15602398

Centisome position: 27.09

GC content: 38.62

Gene sequence:

>246_bases
ATGGCTAAAAAAAGTACAGAAAAAACTGAATTAGATTTTGAAAATACGCTACAACAGCTAGAAGCCATTGTCACACGTTT
AGAAAGTGGTGAGCTTCCTTTGGAAAGCGCCTTAGAAGAATTTGAGCGTGGCATTAAGCTTGCCCATTTGGGACAAGAAC
GTTTACAACAAGCCGAACAACGCATTCAGATTTTATTACAAAAAAGTGACAGCGCGAAATTAAGCGATTACCAAGCGGAA
GAATAA

Upstream 100 bases:

>100_bases
ACATAGGCACTGTCCTCTAAAAAACACGCAAATAATTTTAACATATGCCCAAAAATACAGTACAATGGTGCCCTTAATGC
TTTCGTAAAAAGGATATGCA

Downstream 100 bases:

>100_bases
CAACAATACGAGCATGTTATGTACCAACTTTCACAAGACTTACCCCAACTCCAACAACGTATTAATACTTTTTTAGCGCA
ACAATTGAATGTGGACAGCA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 81; Mature: 80

Protein sequence:

>81_residues
MAKKSTEKTELDFENTLQQLEAIVTRLESGELPLESALEEFERGIKLAHLGQERLQQAEQRIQILLQKSDSAKLSDYQAE
E

Sequences:

>Translated_81_residues
MAKKSTEKTELDFENTLQQLEAIVTRLESGELPLESALEEFERGIKLAHLGQERLQQAEQRIQILLQKSDSAKLSDYQAE
E
>Mature_80_residues
AKKSTEKTELDFENTLQQLEAIVTRLESGELPLESALEEFERGIKLAHLGQERLQQAEQRIQILLQKSDSAKLSDYQAEE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=77, Percent_Identity=57.1428571428571, Blast_Score=84, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_PASMU (Q9CNA0)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245471.1
- ProteinModelPortal:   Q9CNA0
- SMR:   Q9CNA0
- GeneID:   1243881
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0534
- NMPDR:   fig|272843.1.peg.534
- HOGENOM:   HBG728416
- OMA:   PLESALE
- ProtClustDB:   PRK00977
- BioCyc:   PMUL272843:PM0534-MONOMER
- BRENDA:   3.1.11.6
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9274; Mature: 9142

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKSTEKTELDFENTLQQLEAIVTRLESGELPLESALEEFERGIKLAHLGQERLQQAEQ
CCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHCHHHHHHHHH
RIQILLQKSDSAKLSDYQAEE
HHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKKSTEKTELDFENTLQQLEAIVTRLESGELPLESALEEFERGIKLAHLGQERLQQAEQ
CCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHCHHHHHHHHH
RIQILLQKSDSAKLSDYQAEE
HHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100