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The map label for this gene is recD [H]

Identifier: 15602382

GI number: 15602382

Start: 593669

End: 595642

Strand: Direct

Name: recD [H]

Synonym: PM0517

Alternate gene names: 15602382

Gene position: 593669-595642 (Clockwise)

Preceding gene: 15602381

Following gene: 15602383

Centisome position: 26.3

GC content: 41.34

Gene sequence:

>1974_bases
ATGCTTGCTACCTTAAAAGAATTAAAACAACACAAGGTGATCAGTGAAGGGGATTACTACTTTGCGCAATTGATCGCGGA
TAAGCAACCAGATGAACTGCCGCGGGAACAGAAAAATTTAGCCATATTGCTTGCCGCACTTTGTAGTTACAGCTATCAAC
AAGGCAATACTTGCTTGTTTCTAGAGAAAGGGCTGGAATCTAATTATTTTAATTTGGCTTATCGAACAGCAGAGCAGCAT
TATCTTCATATTATTCAAGAAAAAATTGCTTTTCTACCGATTGAATGTTGGCAATCAAGCTTGGCGGATCATATAGCGTT
TACAGCAACGCCGCTGGAAAAAGTCGCCCCTTTAGTGTTTCAGTTTAATGCGCTTTATTTTTATCGTATCTGGCAAGATG
AATACCGAGTTGCTCATTATCTTCAACGTGCAGTACAGCGGGGGGCTGAGACAGCGCCTATTGCTTATGAGCAAATCCAA
GCGATCTTAATGCACTATTTTCCTGCCGTACAGCAAATTGAAGGGGTGAATTGGCAAAAAGTAGCAGTAGCGACCGCGTT
AAAACAACCATTTTGTTTGATTACAGGTGGTCCAGGAACAGGGAAAACCACTACTGTCGCACGTTTACTCTTGGCGTTAC
AGACACTTTCTGCGTGTCAGCTTAAGATTAAGTTAGTTGCACCTACAGGCAAAGCGGCAGCACGCTTGACGGAGTCAATT
AATGGTGCGTTAACGCGTTTAGCACAAGAAAATATGGCGATCAGTGCCGATTTAATTGCCTCTATTCCGACTACAGCGCA
GACCTTACATCGTTTATTGGGCATACGTTTTTTTGAAGAAACACCCACTTTTCATCCAAACAATCCATTGCCATTGGATG
TATTGGTGGTCGATGAGGCGTCTATGATTGACTTGCCATTAATGGCGAAATTATTACAGGCACTCAAACCGAATACCAAA
TTAATTTTGCTTGGAGATGAAAATCAATTGTCTCCTGTGGAAGCAGGGGAAATGTTGGGGGCGTTGTCTGAATTTTCTCA
ACACGCCTATAGTCCTGCGTTAACCCAGTATTTAAAAGCAGTGGCGGATATTGAGTTAATTTCGTCAGATCAAGGTTCCC
CGTTGCGTGATCATTTATGCCGTTTGCATCATAGTCATCGTTTTTCGGGGGATTCTGGAATTGGGCAATTAGCGCAGGCG
ATTAATCAAGGCAATGTTGAGGTAAGTTGGAACGCATTTACCCATTTTAATGATATCGAAATGGTGGATTTTGATCAGGT
TGCCTTATTAAAAGGAGATAACCCGAGTTTATATAGCCAAGCGTGTGCAGCATTAGTGGTAAAAAGTGCGGTTGAAAAAT
ACACAGATTATTTAGTGAAACTGAAAGCATTACAACAACAGTCACCTATACTGAATGAACAACAAGTGGGAGAAATTTTT
GTCTTGTTTAATGCGGTTCGTTTCTTAACAGCATTACGCGTTGGAGAGCTAGGGGTAGAACAGCTAAATCAGAAAATCGC
GCAACGCTTACAACAAAAAGGCTTACTTGATTTTAAACACGAACGCGATTGGTATTTAGGTAAACCAATTATGATCCAGC
AAAATGATCGCCATATTGGCTTATATAATGGCGACATTGGCTTATTTTTAGGACAAGGTAAAGTCTGGTTTGAGCAGGGA
CAAGGGCATTATAAAACTGTGCTCGCTAGCCGTGTGCCAAACTATGAGACCGCGTTTGTGATGACGGTACATAAATCACA
AGGGTCTGAGTTTGCGCACACGTGTTTGGTATTACCGACCGAACCTAACCCGATTTTATCACGTGAATTGATTTATACAG
GCGTGACACGTGCGAAACAGCAATTAACCGTTTTTTCAAGTGCCGAAATTTGGAAAAGTGCGGTGAAAAATCCAGTAAAA
AGACAAAGTGGCTTGAACCAATTGTTAGTTGAATTATTTAACAAATCTGATTAG

Upstream 100 bases:

>100_bases
TGTACACCTTTTTACGAGGCATGAATGGAAAGGATCAACAAGGGATCTCTTTTCATAAGCCAGATGCCAATTTGATTCAA
GAATTAGAGGAGCTTTTTTA

Downstream 100 bases:

>100_bases
AGTAAACTATTTCATGTAAATTAAAAGGAGTAAAAAAATGGAACTCTATGTTTATGATCATTGCCCTTATTGTGTCCGTG
CGATGATGATTTTTGGCTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 657; Mature: 657

Protein sequence:

>657_residues
MLATLKELKQHKVISEGDYYFAQLIADKQPDELPREQKNLAILLAALCSYSYQQGNTCLFLEKGLESNYFNLAYRTAEQH
YLHIIQEKIAFLPIECWQSSLADHIAFTATPLEKVAPLVFQFNALYFYRIWQDEYRVAHYLQRAVQRGAETAPIAYEQIQ
AILMHYFPAVQQIEGVNWQKVAVATALKQPFCLITGGPGTGKTTTVARLLLALQTLSACQLKIKLVAPTGKAAARLTESI
NGALTRLAQENMAISADLIASIPTTAQTLHRLLGIRFFEETPTFHPNNPLPLDVLVVDEASMIDLPLMAKLLQALKPNTK
LILLGDENQLSPVEAGEMLGALSEFSQHAYSPALTQYLKAVADIELISSDQGSPLRDHLCRLHHSHRFSGDSGIGQLAQA
INQGNVEVSWNAFTHFNDIEMVDFDQVALLKGDNPSLYSQACAALVVKSAVEKYTDYLVKLKALQQQSPILNEQQVGEIF
VLFNAVRFLTALRVGELGVEQLNQKIAQRLQQKGLLDFKHERDWYLGKPIMIQQNDRHIGLYNGDIGLFLGQGKVWFEQG
QGHYKTVLASRVPNYETAFVMTVHKSQGSEFAHTCLVLPTEPNPILSRELIYTGVTRAKQQLTVFSSAEIWKSAVKNPVK
RQSGLNQLLVELFNKSD

Sequences:

>Translated_657_residues
MLATLKELKQHKVISEGDYYFAQLIADKQPDELPREQKNLAILLAALCSYSYQQGNTCLFLEKGLESNYFNLAYRTAEQH
YLHIIQEKIAFLPIECWQSSLADHIAFTATPLEKVAPLVFQFNALYFYRIWQDEYRVAHYLQRAVQRGAETAPIAYEQIQ
AILMHYFPAVQQIEGVNWQKVAVATALKQPFCLITGGPGTGKTTTVARLLLALQTLSACQLKIKLVAPTGKAAARLTESI
NGALTRLAQENMAISADLIASIPTTAQTLHRLLGIRFFEETPTFHPNNPLPLDVLVVDEASMIDLPLMAKLLQALKPNTK
LILLGDENQLSPVEAGEMLGALSEFSQHAYSPALTQYLKAVADIELISSDQGSPLRDHLCRLHHSHRFSGDSGIGQLAQA
INQGNVEVSWNAFTHFNDIEMVDFDQVALLKGDNPSLYSQACAALVVKSAVEKYTDYLVKLKALQQQSPILNEQQVGEIF
VLFNAVRFLTALRVGELGVEQLNQKIAQRLQQKGLLDFKHERDWYLGKPIMIQQNDRHIGLYNGDIGLFLGQGKVWFEQG
QGHYKTVLASRVPNYETAFVMTVHKSQGSEFAHTCLVLPTEPNPILSRELIYTGVTRAKQQLTVFSSAEIWKSAVKNPVK
RQSGLNQLLVELFNKSD
>Mature_657_residues
MLATLKELKQHKVISEGDYYFAQLIADKQPDELPREQKNLAILLAALCSYSYQQGNTCLFLEKGLESNYFNLAYRTAEQH
YLHIIQEKIAFLPIECWQSSLADHIAFTATPLEKVAPLVFQFNALYFYRIWQDEYRVAHYLQRAVQRGAETAPIAYEQIQ
AILMHYFPAVQQIEGVNWQKVAVATALKQPFCLITGGPGTGKTTTVARLLLALQTLSACQLKIKLVAPTGKAAARLTESI
NGALTRLAQENMAISADLIASIPTTAQTLHRLLGIRFFEETPTFHPNNPLPLDVLVVDEASMIDLPLMAKLLQALKPNTK
LILLGDENQLSPVEAGEMLGALSEFSQHAYSPALTQYLKAVADIELISSDQGSPLRDHLCRLHHSHRFSGDSGIGQLAQA
INQGNVEVSWNAFTHFNDIEMVDFDQVALLKGDNPSLYSQACAALVVKSAVEKYTDYLVKLKALQQQSPILNEQQVGEIF
VLFNAVRFLTALRVGELGVEQLNQKIAQRLQQKGLLDFKHERDWYLGKPIMIQQNDRHIGLYNGDIGLFLGQGKVWFEQG
QGHYKTVLASRVPNYETAFVMTVHKSQGSEFAHTCLVLPTEPNPILSRELIYTGVTRAKQQLTVFSSAEIWKSAVKNPVK
RQSGLNQLLVELFNKSD

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=652, Percent_Identity=38.6503067484663, Blast_Score=350, Evalue=1e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 73473; Mature: 73473

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLATLKELKQHKVISEGDYYFAQLIADKQPDELPREQKNLAILLAALCSYSYQQGNTCLF
CCCHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
LEKGLESNYFNLAYRTAEQHYLHIIQEKIAFLPIECWQSSLADHIAFTATPLEKVAPLVF
EECCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEECCCHHHHHHHHH
QFNALYFYRIWQDEYRVAHYLQRAVQRGAETAPIAYEQIQAILMHYFPAVQQIEGVNWQK
HHCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
VAVATALKQPFCLITGGPGTGKTTTVARLLLALQTLSACQLKIKLVAPTGKAAARLTESI
HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHH
NGALTRLAQENMAISADLIASIPTTAQTLHRLLGIRFFEETPTFHPNNPLPLDVLVVDEA
HHHHHHHHHHCCCEEHHHHHCCCCHHHHHHHHHCCEECCCCCCCCCCCCCCEEEEEECCC
SMIDLPLMAKLLQALKPNTKLILLGDENQLSPVEAGEMLGALSEFSQHAYSPALTQYLKA
CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
VADIELISSDQGSPLRDHLCRLHHSHRFSGDSGIGQLAQAINQGNVEVSWNAFTHFNDIE
HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEEEECCCCE
MVDFDQVALLKGDNPSLYSQACAALVVKSAVEKYTDYLVKLKALQQQSPILNEQQVGEIF
EECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
VLFNAVRFLTALRVGELGVEQLNQKIAQRLQQKGLLDFKHERDWYLGKPIMIQQNDRHIG
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEE
LYNGDIGLFLGQGKVWFEQGQGHYKTVLASRVPNYETAFVMTVHKSQGSEFAHTCLVLPT
EEECCEEEEEECCEEEEECCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEEEC
EPNPILSRELIYTGVTRAKQQLTVFSSAEIWKSAVKNPVKRQSGLNQLLVELFNKSD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MLATLKELKQHKVISEGDYYFAQLIADKQPDELPREQKNLAILLAALCSYSYQQGNTCLF
CCCHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
LEKGLESNYFNLAYRTAEQHYLHIIQEKIAFLPIECWQSSLADHIAFTATPLEKVAPLVF
EECCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEECCCHHHHHHHHH
QFNALYFYRIWQDEYRVAHYLQRAVQRGAETAPIAYEQIQAILMHYFPAVQQIEGVNWQK
HHCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
VAVATALKQPFCLITGGPGTGKTTTVARLLLALQTLSACQLKIKLVAPTGKAAARLTESI
HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHH
NGALTRLAQENMAISADLIASIPTTAQTLHRLLGIRFFEETPTFHPNNPLPLDVLVVDEA
HHHHHHHHHHCCCEEHHHHHCCCCHHHHHHHHHCCEECCCCCCCCCCCCCCEEEEEECCC
SMIDLPLMAKLLQALKPNTKLILLGDENQLSPVEAGEMLGALSEFSQHAYSPALTQYLKA
CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
VADIELISSDQGSPLRDHLCRLHHSHRFSGDSGIGQLAQAINQGNVEVSWNAFTHFNDIE
HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEEEEECCCCE
MVDFDQVALLKGDNPSLYSQACAALVVKSAVEKYTDYLVKLKALQQQSPILNEQQVGEIF
EECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
VLFNAVRFLTALRVGELGVEQLNQKIAQRLQQKGLLDFKHERDWYLGKPIMIQQNDRHIG
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEE
LYNGDIGLFLGQGKVWFEQGQGHYKTVLASRVPNYETAFVMTVHKSQGSEFAHTCLVLPT
EEECCEEEEEECCEEEEECCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEEEC
EPNPILSRELIYTGVTRAKQQLTVFSSAEIWKSAVKNPVKRQSGLNQLLVELFNKSD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]