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The map label for this gene is ybaK [H]

Identifier: 15602350

GI number: 15602350

Start: 567465

End: 567941

Strand: Reverse

Name: ybaK [H]

Synonym: PM0485

Alternate gene names: 15602350

Gene position: 567941-567465 (Counterclockwise)

Preceding gene: 15602371

Following gene: 15602347

Centisome position: 25.16

GC content: 39.83

Gene sequence:

>477_bases
ATGACACCAGCAATTGATTTACTGAAAAAACATAAGATTGCCTTTGTGCTACATCATTATGATCATGATCCAAATAACAC
CCATTTTGGTGATGAGGCTGTGGAGAAATTAGGGATTGATCCCAACCAGTCGTTTAAAACACTGTTAGTAGCAGAAAATG
GTGATCAGAAAAAATTAGCCTGTTTTGTGTTACCGACTGCGAATATGCTGAATTTAAAGAAAGCCGCAAAAGCGATCGCT
GTGAAAAAAGTGGAAATGGCAGATAAAGAATTTGCCCAGAAAAGTACCGGTTATTTAGTCGGTGGAATCAGCCCATTAGG
ACAAAAGCGTGTCTTAAAAACCGTGATTGCTCAGTCTGCGCTAGCCTTTGAACATATTTTTGTTTCTGGTGGAAAACGAG
GCTTGAGTGTGGAATTAGCACCACAAGACTTAGCCAAACTGCTCAATGCTGAATTTGCGGATATTGTGGACGAATAA

Upstream 100 bases:

>100_bases
AATTCGAATTCTGCCGCAATAGCGACATTTAAGGTTGCGTTCATTTTTCTCTCCGCAGTAAAATAATGGGCTCATTTTAC
TGGAACAAGAAGAAAAGACA

Downstream 100 bases:

>100_bases
GCCTGAAAAAAGATTACCAGCCTAATAAGCTGGTAATCTTGTTATTTCTATTTAAGTCGATAAAATCACTAGAACGCGCT
CGTATCTTGAAATAGCCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MTPAIDLLKKHKIAFVLHHYDHDPNNTHFGDEAVEKLGIDPNQSFKTLLVAENGDQKKLACFVLPTANMLNLKKAAKAIA
VKKVEMADKEFAQKSTGYLVGGISPLGQKRVLKTVIAQSALAFEHIFVSGGKRGLSVELAPQDLAKLLNAEFADIVDE

Sequences:

>Translated_158_residues
MTPAIDLLKKHKIAFVLHHYDHDPNNTHFGDEAVEKLGIDPNQSFKTLLVAENGDQKKLACFVLPTANMLNLKKAAKAIA
VKKVEMADKEFAQKSTGYLVGGISPLGQKRVLKTVIAQSALAFEHIFVSGGKRGLSVELAPQDLAKLLNAEFADIVDE
>Mature_157_residues
TPAIDLLKKHKIAFVLHHYDHDPNNTHFGDEAVEKLGIDPNQSFKTLLVAENGDQKKLACFVLPTANMLNLKKAAKAIAV
KKVEMADKEFAQKSTGYLVGGISPLGQKRVLKTVIAQSALAFEHIFVSGGKRGLSVELAPQDLAKLLNAEFADIVDE

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=155, Percent_Identity=63.8709677419355, Blast_Score=199, Evalue=5e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17219; Mature: 17088

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAIDLLKKHKIAFVLHHYDHDPNNTHFGDEAVEKLGIDPNQSFKTLLVAENGDQKKLA
CCCHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCEEE
CFVLPTANMLNLKKAAKAIAVKKVEMADKEFAQKSTGYLVGGISPLGQKRVLKTVIAQSA
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
LAFEHIFVSGGKRGLSVELAPQDLAKLLNAEFADIVDE
HHHHHHHCCCCCCCCEEEECHHHHHHHHCCHHHHHHCC
>Mature Secondary Structure 
TPAIDLLKKHKIAFVLHHYDHDPNNTHFGDEAVEKLGIDPNQSFKTLLVAENGDQKKLA
CCHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCEEE
CFVLPTANMLNLKKAAKAIAVKKVEMADKEFAQKSTGYLVGGISPLGQKRVLKTVIAQSA
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH
LAFEHIFVSGGKRGLSVELAPQDLAKLLNAEFADIVDE
HHHHHHHCCCCCCCCEEEECHHHHHHHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]