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The map label for this gene is rnfD

Identifier: 15602249

GI number: 15602249

Start: 452034

End: 453083

Strand: Reverse

Name: rnfD

Synonym: PM0384

Alternate gene names: 15602249

Gene position: 453083-452034 (Counterclockwise)

Preceding gene: 15602250

Following gene: 15602248

Centisome position: 20.07

GC content: 43.62

Gene sequence:

>1050_bases
ATGTTTAAAATGGTCAGTTCCCCTCATACTCATTCCGGTAAACTCACAATGCGTATTATGTTGTGGGTCATTTTAGCAAT
GTTACCGGCAATGGGTGTGCAACTCTACTATTTTGGCTTTGGTGTCTTAATTCAAGCGGCATTAGCCATCAGCTTCGCCT
TATGTTTGGAGGGAATTGTCACCGTATTACGCCAAAAACCGACGCTGTTCTATCTGTCAGATTTCAGTGTGATTTTAACT
GCGCTGATTCTTGCTATGGCAATTCCCCCTTACGCCCCTTATTGGCTGATTCTGATTGGGACATTTTGCGCGGTGATCTT
AGGTAAACATGTTTATGGTGGCTTAGGGCAAAACTTATTCAATCCAGCGATGGTTGGTTATGTGGTGTTACTAATATCGT
TCCCATTACAAATGACCACTTGGTTACCTCCAATCCAATTGCTTAACGAACCCCCTACTTTACTGGATGCTTATTCGTTA
ATTTTTACAGGATTTAGCACAGATGGCTTTAGCCTACATCAATTTACGCAGTCCGTAGATGCGATAACACAAGCAACGCC
ACTTGATAGTGCCAAAGTGATCTTAAAAGAGGGCGTTAACGATAACACATTGCTTCAATCACCAATTTTTGAGGCGGGAT
TTGCGATTGGCTGGTGGCAAGTTAATTTGGCATTTTTATTAGGTGGGCTATTTTTAATTTGGAAACGGATCATTCACTGG
CAAATCCCCGTCGCCATGCTAGTCAGTTTTACACTTTTGGCGGCAATCACGGAACTCGTGGCAAGTATCCCTTATCTGAA
AACTTTACCACATTTATTCAGTGGTGCCATGATGTTTGGTGCGTTCTTTATAGCTACCGATCCGGTCACTGCCTCGATTA
CCCCACGAGGTAAACTCGTATTCGGGGCACTGGTTGGCTTTTTGGTGTATATCATTCGTTTCTACGGCAATTATCCGGAC
GGGGTTGCCTTTGCGGTGCTATTAGGCAATATCTGTGTACCACTCATTGATCACTATACCCGACCACGTGTCAGCGGTCA
TCGTCAATAA

Upstream 100 bases:

>100_bases
AAGATCCACGCAAAGCGGCGATTGCCGCCGCCATTGCGCGCGCTAAAGCTAAGAAAGCCGCTAAAGCCAATAATCATGAC
GCATAAGGACGAGAAATTAC

Downstream 100 bases:

>100_bases
GGAGCAAGCATGAAAACCGTTAAAATTTCTGCTTATTATGCGATTTTACTTGCCCTGATTGCGTTGATTTGTACCGCACT
TTCAACGGGCATTTATCTAT

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MFKMVSSPHTHSGKLTMRIMLWVILAMLPAMGVQLYYFGFGVLIQAALAISFALCLEGIVTVLRQKPTLFYLSDFSVILT
ALILAMAIPPYAPYWLILIGTFCAVILGKHVYGGLGQNLFNPAMVGYVVLLISFPLQMTTWLPPIQLLNEPPTLLDAYSL
IFTGFSTDGFSLHQFTQSVDAITQATPLDSAKVILKEGVNDNTLLQSPIFEAGFAIGWWQVNLAFLLGGLFLIWKRIIHW
QIPVAMLVSFTLLAAITELVASIPYLKTLPHLFSGAMMFGAFFIATDPVTASITPRGKLVFGALVGFLVYIIRFYGNYPD
GVAFAVLLGNICVPLIDHYTRPRVSGHRQ

Sequences:

>Translated_349_residues
MFKMVSSPHTHSGKLTMRIMLWVILAMLPAMGVQLYYFGFGVLIQAALAISFALCLEGIVTVLRQKPTLFYLSDFSVILT
ALILAMAIPPYAPYWLILIGTFCAVILGKHVYGGLGQNLFNPAMVGYVVLLISFPLQMTTWLPPIQLLNEPPTLLDAYSL
IFTGFSTDGFSLHQFTQSVDAITQATPLDSAKVILKEGVNDNTLLQSPIFEAGFAIGWWQVNLAFLLGGLFLIWKRIIHW
QIPVAMLVSFTLLAAITELVASIPYLKTLPHLFSGAMMFGAFFIATDPVTASITPRGKLVFGALVGFLVYIIRFYGNYPD
GVAFAVLLGNICVPLIDHYTRPRVSGHRQ
>Mature_349_residues
MFKMVSSPHTHSGKLTMRIMLWVILAMLPAMGVQLYYFGFGVLIQAALAISFALCLEGIVTVLRQKPTLFYLSDFSVILT
ALILAMAIPPYAPYWLILIGTFCAVILGKHVYGGLGQNLFNPAMVGYVVLLISFPLQMTTWLPPIQLLNEPPTLLDAYSL
IFTGFSTDGFSLHQFTQSVDAITQATPLDSAKVILKEGVNDNTLLQSPIFEAGFAIGWWQVNLAFLLGGLFLIWKRIIHW
QIPVAMLVSFTLLAAITELVASIPYLKTLPHLFSGAMMFGAFFIATDPVTASITPRGKLVFGALVGFLVYIIRFYGNYPD
GVAFAVLLGNICVPLIDHYTRPRVSGHRQ

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family

Homologues:

Organism=Escherichia coli, GI1787917, Length=350, Percent_Identity=51.1428571428571, Blast_Score=353, Evalue=9e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFD_PASMU (Q9CNP3)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245321.1
- GeneID:   1243731
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0384
- NMPDR:   fig|272843.1.peg.384
- HOGENOM:   HBG454412
- OMA:   WVILAML
- ProtClustDB:   PRK00816
- BioCyc:   PMUL272843:PM0384-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00462
- InterPro:   IPR011303
- InterPro:   IPR004338
- TIGRFAMs:   TIGR01946

Pfam domain/function: PF03116 NQR2_RnfD_RnfE

EC number: NA

Molecular weight: Translated: 38470; Mature: 38470

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc0d9cf0)-; HASH(0xc7cc91c)-; HASH(0xc96f67c)-; HASH(0xca24f00)-; HASH(0xb3f0548)-; HASH(0xc6e7fe4)-; HASH(0xc8b44f8)-; HASH(0xcb0afb8)-; HASH(0xbe09468)-; HASH(0xcea8ec4)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKMVSSPHTHSGKLTMRIMLWVILAMLPAMGVQLYYFGFGVLIQAALAISFALCLEGIV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVLRQKPTLFYLSDFSVILTALILAMAIPPYAPYWLILIGTFCAVILGKHVYGGLGQNLF
HHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHC
NPAMVGYVVLLISFPLQMTTWLPPIQLLNEPPTLLDAYSLIFTGFSTDGFSLHQFTQSVD
CHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AITQATPLDSAKVILKEGVNDNTLLQSPIFEAGFAIGWWQVNLAFLLGGLFLIWKRIIHW
HHHHCCCCCHHHHHHHCCCCCCCHHHCCHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHH
QIPVAMLVSFTLLAAITELVASIPYLKTLPHLFSGAMMFGAFFIATDPVTASITPRGKLV
HCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
FGALVGFLVYIIRFYGNYPDGVAFAVLLGNICVPLIDHYTRPRVSGHRQ
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
>Mature Secondary Structure
MFKMVSSPHTHSGKLTMRIMLWVILAMLPAMGVQLYYFGFGVLIQAALAISFALCLEGIV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVLRQKPTLFYLSDFSVILTALILAMAIPPYAPYWLILIGTFCAVILGKHVYGGLGQNLF
HHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHC
NPAMVGYVVLLISFPLQMTTWLPPIQLLNEPPTLLDAYSLIFTGFSTDGFSLHQFTQSVD
CHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AITQATPLDSAKVILKEGVNDNTLLQSPIFEAGFAIGWWQVNLAFLLGGLFLIWKRIIHW
HHHHCCCCCHHHHHHHCCCCCCCHHHCCHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHH
QIPVAMLVSFTLLAAITELVASIPYLKTLPHLFSGAMMFGAFFIATDPVTASITPRGKLV
HCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
FGALVGFLVYIIRFYGNYPDGVAFAVLLGNICVPLIDHYTRPRVSGHRQ
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100