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The map label for this gene is ubiD

Identifier: 15602083

GI number: 15602083

Start: 241440

End: 242918

Strand: Direct

Name: ubiD

Synonym: PM0218

Alternate gene names: 15602083

Gene position: 241440-242918 (Clockwise)

Preceding gene: 15602081

Following gene: 15602086

Centisome position: 10.7

GC content: 43.61

Gene sequence:

>1479_bases
ATGAAATATAAAGATTTGCGTGATTTTCTTACTTTATTGGAACAGCGTGGTGAGCTAAAGCGGATCAAGCAAGAAATTGA
TCCACATTTAGAAATGACCGAAATTGCAGACCGCACATTGCGCGCAGGCGGTCCAGCGTTATTGTTTGAAAATCCAAAAG
GATTTGATATCCCCGTACTGTGTAATTTATTTGGGACACCGAAAAGAGTAGCAATGGGGATGGGGCAAGAGCAGGTCTCC
GCGTTACGTGACGTCGGGAAATTATTGGCTTTTTTAAAAGAGCCTGAGCCACCGAAAGGGTTTAAAGATTTTCTTTCGAG
TATTCCGCAATTTAAGCAGGTGTTGAATATGCCCACTAAAGTATTGGGTAAAGCTGATTGCCAACAAGTCGTTTTAAAGG
ACGAGGATGTTGATCTGTATAAGCTGCCTATTATGCAATGCTGGAAAGAAGATGTCGCGCCCTTAGTGACATGGGGCTTG
ACGATCACAAAAGGACCATTGAAAAAACGCCAAAATTTAGGCATTTATCGCCAACAATTAGTGGCTAAAAATAAATTGAT
TATGCGTTGGCTATCTCACCGTGGTGGCGCATTAGATTTCCAAGAGTGGAAAGAAACACACCCTGGCGAGCCATTTCCTG
TTTCTGTGGCACTGGGCGCCGATCCTGCGACGATTTTAGGCGCTGTTACGCCGGTACCAGATACCTTGTCAGAGTATGCC
TTTGCGGGATTATTACGTGGGACCAAGACGTCTGTGGTGAAATCCGTCAGCAATGATCTGGAAGTCCCCGCCAGTGCAGA
AATTGTGCTAGAAGGCTATATTGATCCGAATGAAACCGCCTTGGAAGGTCCATATGGTGATCATACGGGGTATTATAATG
AACAAGAATATTTCCCTGTGTTTACGGTTACCCATATTACTATGCGTAAAGATCCGATTTATCATTCTACTTACACGGGG
CGTCCGCCCGATGAGCCTGCTGTTTTGGGTGAAGCACTAAATGAAGTGTTTATTCCGATTCTGCAAAAGCAGTTTCCCGA
AATTGTGGATTTTTATTTACCACCTGAAGGCTGTTCTTATCGTTTAGCGGTGGTTACGATTAAGAAACAGTATGCTGGTC
ATGCTAAACGCGTGATGATGGGCGTTTGGTCTTTCTTACGTCAGTTTATGTACACAAAGTTTGTGATTGTTTGTGATGAT
GATGTCAATGCACGAGATTGGAAAGATGTGATCTGGGCGATGACCACAAGATGTGATCCGGCTCGTGATTTAACTTTAGT
GGAAAATACACCGATTGATTACCTTGATTTTGCTTCACCTGTTGCCGGTTTAGGCTCCAAAATGGGAATTGATGCAACCA
ATAAATGGCCGGGAGAAACTCAACGTGAATGGGGGGTACCGATTAAAAAAGATCCCGATGTAGTGAAAAGGGTGGATGAG
ATTTGGGACAGTTTAGCTATCTTTGAAAATGAGCCATAG

Upstream 100 bases:

>100_bases
CAAAATTGCTTGCAATCAAGCTTGTTGTCTATAACATATTTTACTGTCTAAGGTGCGAGTAGAAATTGGCATCGAAAATA
ACATTCAAATGGTACTGACT

Downstream 100 bases:

>100_bases
CATAAAAAAGCCTGTAATACATATTACAGGCTTTTTGAATTATCCAGTTTATTCCAATTCACCACAGAAACGATAACCTT
CACCATGGATCGTGGCGATA

Product: hypothetical protein

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MKYKDLRDFLTLLEQRGELKRIKQEIDPHLEMTEIADRTLRAGGPALLFENPKGFDIPVLCNLFGTPKRVAMGMGQEQVS
ALRDVGKLLAFLKEPEPPKGFKDFLSSIPQFKQVLNMPTKVLGKADCQQVVLKDEDVDLYKLPIMQCWKEDVAPLVTWGL
TITKGPLKKRQNLGIYRQQLVAKNKLIMRWLSHRGGALDFQEWKETHPGEPFPVSVALGADPATILGAVTPVPDTLSEYA
FAGLLRGTKTSVVKSVSNDLEVPASAEIVLEGYIDPNETALEGPYGDHTGYYNEQEYFPVFTVTHITMRKDPIYHSTYTG
RPPDEPAVLGEALNEVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDD
DVNARDWKDVIWAMTTRCDPARDLTLVENTPIDYLDFASPVAGLGSKMGIDATNKWPGETQREWGVPIKKDPDVVKRVDE
IWDSLAIFENEP

Sequences:

>Translated_492_residues
MKYKDLRDFLTLLEQRGELKRIKQEIDPHLEMTEIADRTLRAGGPALLFENPKGFDIPVLCNLFGTPKRVAMGMGQEQVS
ALRDVGKLLAFLKEPEPPKGFKDFLSSIPQFKQVLNMPTKVLGKADCQQVVLKDEDVDLYKLPIMQCWKEDVAPLVTWGL
TITKGPLKKRQNLGIYRQQLVAKNKLIMRWLSHRGGALDFQEWKETHPGEPFPVSVALGADPATILGAVTPVPDTLSEYA
FAGLLRGTKTSVVKSVSNDLEVPASAEIVLEGYIDPNETALEGPYGDHTGYYNEQEYFPVFTVTHITMRKDPIYHSTYTG
RPPDEPAVLGEALNEVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDD
DVNARDWKDVIWAMTTRCDPARDLTLVENTPIDYLDFASPVAGLGSKMGIDATNKWPGETQREWGVPIKKDPDVVKRVDE
IWDSLAIFENEP
>Mature_492_residues
MKYKDLRDFLTLLEQRGELKRIKQEIDPHLEMTEIADRTLRAGGPALLFENPKGFDIPVLCNLFGTPKRVAMGMGQEQVS
ALRDVGKLLAFLKEPEPPKGFKDFLSSIPQFKQVLNMPTKVLGKADCQQVVLKDEDVDLYKLPIMQCWKEDVAPLVTWGL
TITKGPLKKRQNLGIYRQQLVAKNKLIMRWLSHRGGALDFQEWKETHPGEPFPVSVALGADPATILGAVTPVPDTLSEYA
FAGLLRGTKTSVVKSVSNDLEVPASAEIVLEGYIDPNETALEGPYGDHTGYYNEQEYFPVFTVTHITMRKDPIYHSTYTG
RPPDEPAVLGEALNEVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDD
DVNARDWKDVIWAMTTRCDPARDLTLVENTPIDYLDFASPVAGLGSKMGIDATNKWPGETQREWGVPIKKDPDVVKRVDE
IWDSLAIFENEP

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=490, Percent_Identity=84.6938775510204, Blast_Score=870, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=442, Percent_Identity=27.1493212669683, Blast_Score=134, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_PASMU (Q9CP43)

Other databases:

- EMBL:   AE004439
- RefSeq:   NP_245155.1
- ProteinModelPortal:   Q9CP43
- SMR:   Q9CP43
- GeneID:   1243565
- GenomeReviews:   AE004439_GR
- KEGG:   pmu:PM0218
- NMPDR:   fig|272843.1.peg.218
- HOGENOM:   HBG564733
- OMA:   LNRIYTP
- ProtClustDB:   CLSK508727
- BioCyc:   PMUL272843:PM0218-MONOMER
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 55509; Mature: 55509

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKDLRDFLTLLEQRGELKRIKQEIDPHLEMTEIADRTLRAGGPALLFENPKGFDIPVL
CCHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
CNLFGTPKRVAMGMGQEQVSALRDVGKLLAFLKEPEPPKGFKDFLSSIPQFKQVLNMPTK
HCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHH
VLGKADCQQVVLKDEDVDLYKLPIMQCWKEDVAPLVTWGLTITKGPLKKRQNLGIYRQQL
HHCHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHCCEEECCHHHHHHCCCHHHHHH
VAKNKLIMRWLSHRGGALDFQEWKETHPGEPFPVSVALGADPATILGAVTPVPDTLSEYA
HHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCHHHHHHH
FAGLLRGTKTSVVKSVSNDLEVPASAEIVLEGYIDPNETALEGPYGDHTGYYNEQEYFPV
HHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEE
FTVTHITMRKDPIYHSTYTGRPPDEPAVLGEALNEVFIPILQKQFPEIVDFYLPPEGCSY
EEEEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWKDVIWAMTTRCDP
EEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHCCCC
ARDLTLVENTPIDYLDFASPVAGLGSKMGIDATNKWPGETQREWGVPIKKDPDVVKRVDE
CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHH
IWDSLAIFENEP
HHHHHHHCCCCC
>Mature Secondary Structure
MKYKDLRDFLTLLEQRGELKRIKQEIDPHLEMTEIADRTLRAGGPALLFENPKGFDIPVL
CCHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
CNLFGTPKRVAMGMGQEQVSALRDVGKLLAFLKEPEPPKGFKDFLSSIPQFKQVLNMPTK
HCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHH
VLGKADCQQVVLKDEDVDLYKLPIMQCWKEDVAPLVTWGLTITKGPLKKRQNLGIYRQQL
HHCHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHCCEEECCHHHHHHCCCHHHHHH
VAKNKLIMRWLSHRGGALDFQEWKETHPGEPFPVSVALGADPATILGAVTPVPDTLSEYA
HHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEECCCCHHHHHCCCCCCHHHHHHH
FAGLLRGTKTSVVKSVSNDLEVPASAEIVLEGYIDPNETALEGPYGDHTGYYNEQEYFPV
HHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEE
FTVTHITMRKDPIYHSTYTGRPPDEPAVLGEALNEVFIPILQKQFPEIVDFYLPPEGCSY
EEEEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWKDVIWAMTTRCDP
EEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHCCCC
ARDLTLVENTPIDYLDFASPVAGLGSKMGIDATNKWPGETQREWGVPIKKDPDVVKRVDE
CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHH
IWDSLAIFENEP
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11248100