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The map label for this gene is sigX

Identifier: 15674148

GI number: 15674148

Start: 2242478

End: 2242972

Strand: Direct

Name: sigX

Synonym: L0142

Alternate gene names: NA

Gene position: 2242478-2242972 (Clockwise)

Preceding gene: 15674137

Following gene: 15674149

Centisome position: 94.8

GC content: 32.32

Gene sequence:

>495_bases
ATGGTGAATTTAAAAGAATATGAAAATGACGTCAATGATTATGCGATAGAAATCACTAAATACCTTATCTCTCGGGGAAG
TCAGTTGGTCGATGCCGAAGAGGCCGTACAGGATACTCTGGTTAAAATTTTAAGTCTGGATATTTTCATTGAACCTGACA
AATTACGGGCTTTTATGTATCGAACATCTATCCGAACTTATATTAATAGTTATAATCGGAGTAAACATTATCAAAAAATT
ATTAAAAATTTGGAAAAAGAATTGGAAACAGCAGCTTTTTTAGTTGAGTCTAGCCCACTTCCAAAAATCATTGAACAACT
TCCACCTTATTATAAAGAGCTTTTAAATGCATACTATTATGAAAATTGTTCAACTAAACAGCTTGCAGAATATTTTGAAT
GTAGTTTAAGCAAAATCAAAATCGACCTTTATCGAGCTCGAAAAAAGCTTAAAAAACAACTTGAAAAAGCTGGTTATGAC
CAGTGGCTCCTCTAA

Upstream 100 bases:

>100_bases
ACAGCTTTATCAAAATAATTCTTCTACTTATATCAATTTTTGTTAAAATAAACTGTAACCAAACTTAATTTGATTTGTTA
TATATATGAGAGAGGAGGAA

Downstream 100 bases:

>100_bases
TCGTCTCATGAAAGGATTTAAAAATGCATACTCTCTTAATTTTCCCTTACCTTGTTTTAGCTATCACTTTATTTTTCGGA
CTGATTCGTCTGTTTATTTT

Product: RNA polymerase ECF sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Family; DNA Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase ECF Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MVNLKEYENDVNDYAIEITKYLISRGSQLVDAEEAVQDTLVKILSLDIFIEPDKLRAFMYRTSIRTYINSYNRSKHYQKI
IKNLEKELETAAFLVESSPLPKIIEQLPPYYKELLNAYYYENCSTKQLAEYFECSLSKIKIDLYRARKKLKKQLEKAGYD
QWLL

Sequences:

>Translated_164_residues
MVNLKEYENDVNDYAIEITKYLISRGSQLVDAEEAVQDTLVKILSLDIFIEPDKLRAFMYRTSIRTYINSYNRSKHYQKI
IKNLEKELETAAFLVESSPLPKIIEQLPPYYKELLNAYYYENCSTKQLAEYFECSLSKIKIDLYRARKKLKKQLEKAGYD
QWLL
>Mature_164_residues
MVNLKEYENDVNDYAIEITKYLISRGSQLVDAEEAVQDTLVKILSLDIFIEPDKLRAFMYRTSIRTYINSYNRSKHYQKI
IKNLEKELETAAFLVESSPLPKIIEQLPPYYKELLNAYYYENCSTKQLAEYFECSLSKIKIDLYRARKKLKKQLEKAGYD
QWLL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19474; Mature: 19474

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNLKEYENDVNDYAIEITKYLISRGSQLVDAEEAVQDTLVKILSLDIFIEPDKLRAFMY
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECHHHHHHHHH
RTSIRTYINSYNRSKHYQKIIKNLEKELETAAFLVESSPLPKIIEQLPPYYKELLNAYYY
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHH
ENCSTKQLAEYFECSLSKIKIDLYRARKKLKKQLEKAGYDQWLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVNLKEYENDVNDYAIEITKYLISRGSQLVDAEEAVQDTLVKILSLDIFIEPDKLRAFMY
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECHHHHHHHHH
RTSIRTYINSYNRSKHYQKIIKNLEKELETAAFLVESSPLPKIIEQLPPYYKELLNAYYY
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHH
ENCSTKQLAEYFECSLSKIKIDLYRARKKLKKQLEKAGYDQWLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA