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The map label for this gene is ywdC

Identifier: 15674140

GI number: 15674140

Start: 2233466

End: 2234293

Strand: Reverse

Name: ywdC

Synonym: L16911

Alternate gene names: 15674140

Gene position: 2234293-2233466 (Counterclockwise)

Preceding gene: 15674141

Following gene: 15674139

Centisome position: 94.45

GC content: 29.71

Gene sequence:

>828_bases
ATGTTTAGAGATGACGAACTTTTTTTACCAATTAAGGTGTATATATATTTAACTAATCATTGTCATTACGAATGTGATTA
CTGCTTCCTTAAAGAAATGAAGATGTTAAATACAAAAGAGATCTCAAAAGAAGATTTAGAAAAAATAGCTTATTATTTAG
AAAAATATAAAGTACCATTAGTTGCTATTTGTGGGGGAGATCCAATTCTCCACCCAAAACTTATTGATTTTGTCCAATTA
CTATCAGAACATAAGAATTATCCAACTATAGCGACTAATGCAGTTGACGTATCCTATGAGTATTTATATCAGTTAAAATC
AGCAGGAATTCGATATTTACAGATAGGCATTGATAGTTTGCAATATTCAAAATTGGATAATTACAAAGAAAACGGGCATC
TTAGAAAAGTTGAAAAAACTGTGAAATATTTAAAAGAATTGGGGATATTATATGGTTTTGCAACTTGTGTCACTCGAAAA
AATATTGGAGAGCTTAGTAAAATTGCGAGTTATGCTAAAGAAACAGGAGCCGAACTGTTGAAACTTTCAACTTATGATGG
AGAAAATCAAGTATATAAATTAACAGAAATTCAAAAAGAAGAGTTAAAAATCTTTGTAAGACAATATAATACTGATGGGA
TTTATGTACGCTACTCGCCTGTTCAAGAAACATTAAATTATGTATCGGAATATCCCTCCCTGACAATATATGCAAACGGG
GATTTAGCAATTGAAGAAACAGGAGATGTTATTGGAAATATTTCCACTTCTGAACCAGCTGTAGAATATAAAAAATATAT
ATTAGAAAAATGGAGAACAAATAAATGA

Upstream 100 bases:

>100_bases
CAAGGGGGAGTTGATAACTATTTGATGACCTATTTATATATTAGTGCAATTTTTGTCCTAATTATTATGGCTTTAGGTAT
CTTTGGAAAGGGGAAAAAAT

Downstream 100 bases:

>100_bases
AGTATAAATTAAACCCATTATTTACGCTCAGAAAAACAGATAAAGCAGTCTTCAATTTCTCAAGGGCGGAATTAACACAA
TTCAACGATACAGGTTTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MFRDDELFLPIKVYIYLTNHCHYECDYCFLKEMKMLNTKEISKEDLEKIAYYLEKYKVPLVAICGGDPILHPKLIDFVQL
LSEHKNYPTIATNAVDVSYEYLYQLKSAGIRYLQIGIDSLQYSKLDNYKENGHLRKVEKTVKYLKELGILYGFATCVTRK
NIGELSKIASYAKETGAELLKLSTYDGENQVYKLTEIQKEELKIFVRQYNTDGIYVRYSPVQETLNYVSEYPSLTIYANG
DLAIEETGDVIGNISTSEPAVEYKKYILEKWRTNK

Sequences:

>Translated_275_residues
MFRDDELFLPIKVYIYLTNHCHYECDYCFLKEMKMLNTKEISKEDLEKIAYYLEKYKVPLVAICGGDPILHPKLIDFVQL
LSEHKNYPTIATNAVDVSYEYLYQLKSAGIRYLQIGIDSLQYSKLDNYKENGHLRKVEKTVKYLKELGILYGFATCVTRK
NIGELSKIASYAKETGAELLKLSTYDGENQVYKLTEIQKEELKIFVRQYNTDGIYVRYSPVQETLNYVSEYPSLTIYANG
DLAIEETGDVIGNISTSEPAVEYKKYILEKWRTNK
>Mature_275_residues
MFRDDELFLPIKVYIYLTNHCHYECDYCFLKEMKMLNTKEISKEDLEKIAYYLEKYKVPLVAICGGDPILHPKLIDFVQL
LSEHKNYPTIATNAVDVSYEYLYQLKSAGIRYLQIGIDSLQYSKLDNYKENGHLRKVEKTVKYLKELGILYGFATCVTRK
NIGELSKIASYAKETGAELLKLSTYDGENQVYKLTEIQKEELKIFVRQYNTDGIYVRYSPVQETLNYVSEYPSLTIYANG
DLAIEETGDVIGNISTSEPAVEYKKYILEKWRTNK

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 31981; Mature: 31981

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRDDELFLPIKVYIYLTNHCHYECDYCFLKEMKMLNTKEISKEDLEKIAYYLEKYKVPL
CCCCCCEEEEEEEEEEEECCCCEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCE
VAICGGDPILHPKLIDFVQLLSEHKNYPTIATNAVDVSYEYLYQLKSAGIRYLQIGIDSL
EEEECCCCCCCHHHHHHHHHHHHCCCCCCEECCEEHHHHHHHHHHHHCCEEEEEEECCHH
QYSKLDNYKENGHLRKVEKTVKYLKELGILYGFATCVTRKNIGELSKIASYAKETGAELL
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHE
KLSTYDGENQVYKLTEIQKEELKIFVRQYNTDGIYVRYSPVQETLNYVSEYPSLTIYANG
EEECCCCCCCEEEHHHHHHHHHHHHHEEECCCEEEEEECCHHHHHHHHHHCCCEEEEECC
DLAIEETGDVIGNISTSEPAVEYKKYILEKWRTNK
CEEEEECCCHHCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFRDDELFLPIKVYIYLTNHCHYECDYCFLKEMKMLNTKEISKEDLEKIAYYLEKYKVPL
CCCCCCEEEEEEEEEEEECCCCEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCE
VAICGGDPILHPKLIDFVQLLSEHKNYPTIATNAVDVSYEYLYQLKSAGIRYLQIGIDSL
EEEECCCCCCCHHHHHHHHHHHHCCCCCCEECCEEHHHHHHHHHHHHCCEEEEEEECCHH
QYSKLDNYKENGHLRKVEKTVKYLKELGILYGFATCVTRKNIGELSKIASYAKETGAELL
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHE
KLSTYDGENQVYKLTEIQKEELKIFVRQYNTDGIYVRYSPVQETLNYVSEYPSLTIYANG
EEECCCCCCCEEEHHHHHHHHHHHHHEEECCCEEEEEECCHHHHHHHHHHCCCEEEEECC
DLAIEETGDVIGNISTSEPAVEYKKYILEKWRTNK
CEEEEECCCHHCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]