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The map label for this gene is yvdF

Identifier: 15674033

GI number: 15674033

Start: 2137834

End: 2138676

Strand: Direct

Name: yvdF

Synonym: L121253

Alternate gene names: 15674033

Gene position: 2137834-2138676 (Clockwise)

Preceding gene: 15674032

Following gene: 15674038

Centisome position: 90.37

GC content: 35.23

Gene sequence:

>843_bases
ATGAAAAAAATAAAATTGTTGACTCTTGCAACAGTTGGAATTGCCTCAATTGGCTTACTTGCTGCTTGCTCGTCAAAAGA
TAATTCATCTTCTAAATCAACAGATAAAGTAACAACCGTAACTGTTGCAACTTCTGCCGCTTCTGTCCCTTATGAATACA
GCGAAAATGGCAAAATGACTGGTTTTGAATATGATATTTTAAAAGCTGCTGACAAAGACATGAAGGATTATAAATTCGAC
TTTAAAGTCTATGAAGATAGTGCGATTTTAGCTGCTTTAGACGGTGGTCGTGCACAAATTGCGGCAAATAATTTTGGTAA
GACAAAAGCACGTTCTGAAAAATATCTCTTTAGCTATCCTGTTCGCCAAGGAATTGATGCGATTTTCTCAACATCTAAAG
AAAATATTACAAAAATCTCTCAACTTGCTGGTAAAACGACAGAAATTCCTGCTGGAACCAACTATGGTGATATGTTTGAA
AGCTGGAACAAAAATCATCCAGACAAAAAAATCAATGTAAAATACAGCCAACGTCCTTTAGCCGACCGTTTATCTGCTAT
TTCTAGTGGACAAATTGATTTCTTATTTGCTTCTAAAGCACCCGCAGAAAATTTGATTAAAGAACATGCAATCACAGGTT
TAGTGGATACTGTTCCAACAGACTTGGATAAACAACCAGAATTTAAAACTTATGATTACTTTATTCTTGATAACAGCCAA
AGCAAGTTGCAAAAAGATTTGAATGTTGAGCTCAAAAAACTTTACGACAACGGCACACTTAAAAAACTGTCAGAACAATA
TTTCCATGACAGCCATATTCCAGCTGCTGACCAATTCAAATAA

Upstream 100 bases:

>100_bases
ATGTTAATATTATGTCTATATTAAAAGTCAGCTCACTCGTAACCAACTTCCAAATTTAAAATAAAAACTGAGCTGACAAA
ATTTCTGAGGAGAAATTGAT

Downstream 100 bases:

>100_bases
TTAAATAACTCGTCAATGACGAGTTTTTTTTACTGACAGAAATTTTTTGTGCGATACTCACTCATAAAAGAAAGCTGTCA
GTAACTTTTATTTCACTTCA

Product: amino acid ABC transporter substrate binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MKKIKLLTLATVGIASIGLLAACSSKDNSSSKSTDKVTTVTVATSAASVPYEYSENGKMTGFEYDILKAADKDMKDYKFD
FKVYEDSAILAALDGGRAQIAANNFGKTKARSEKYLFSYPVRQGIDAIFSTSKENITKISQLAGKTTEIPAGTNYGDMFE
SWNKNHPDKKINVKYSQRPLADRLSAISSGQIDFLFASKAPAENLIKEHAITGLVDTVPTDLDKQPEFKTYDYFILDNSQ
SKLQKDLNVELKKLYDNGTLKKLSEQYFHDSHIPAADQFK

Sequences:

>Translated_280_residues
MKKIKLLTLATVGIASIGLLAACSSKDNSSSKSTDKVTTVTVATSAASVPYEYSENGKMTGFEYDILKAADKDMKDYKFD
FKVYEDSAILAALDGGRAQIAANNFGKTKARSEKYLFSYPVRQGIDAIFSTSKENITKISQLAGKTTEIPAGTNYGDMFE
SWNKNHPDKKINVKYSQRPLADRLSAISSGQIDFLFASKAPAENLIKEHAITGLVDTVPTDLDKQPEFKTYDYFILDNSQ
SKLQKDLNVELKKLYDNGTLKKLSEQYFHDSHIPAADQFK
>Mature_280_residues
MKKIKLLTLATVGIASIGLLAACSSKDNSSSKSTDKVTTVTVATSAASVPYEYSENGKMTGFEYDILKAADKDMKDYKFD
FKVYEDSAILAALDGGRAQIAANNFGKTKARSEKYLFSYPVRQGIDAIFSTSKENITKISQLAGKTTEIPAGTNYGDMFE
SWNKNHPDKKINVKYSQRPLADRLSAISSGQIDFLFASKAPAENLIKEHAITGLVDTVPTDLDKQPEFKTYDYFILDNSQ
SKLQKDLNVELKKLYDNGTLKKLSEQYFHDSHIPAADQFK

Specific function: Probably part of the ABC transporter complex yxeMNO that could be involved in amino-acid import. May transport S- methylcysteine [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=279, Percent_Identity=25.4480286738351, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015683
- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 31023; Mature: 31023

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIKLLTLATVGIASIGLLAACSSKDNSSSKSTDKVTTVTVATSAASVPYEYSENGKMT
CCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCEEECCCCCCC
GFEYDILKAADKDMKDYKFDFKVYEDSAILAALDGGRAQIAANNFGKTKARSEKYLFSYP
CCCHHHHHHCCCCCHHEEEEEEEEECCEEEEEECCCCEEEEECCCCCCHHCCCCEEEECC
VRQGIDAIFSTSKENITKISQLAGKTTEIPAGTNYGDMFESWNKNHPDKKINVKYSQRPL
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCH
ADRLSAISSGQIDFLFASKAPAENLIKEHAITGLVDTVPTDLDKQPEFKTYDYFILDNSQ
HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCH
SKLQKDLNVELKKLYDNGTLKKLSEQYFHDSHIPAADQFK
HHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKKIKLLTLATVGIASIGLLAACSSKDNSSSKSTDKVTTVTVATSAASVPYEYSENGKMT
CCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCEEECCCCCCC
GFEYDILKAADKDMKDYKFDFKVYEDSAILAALDGGRAQIAANNFGKTKARSEKYLFSYP
CCCHHHHHHCCCCCHHEEEEEEEEECCEEEEEECCCCEEEEECCCCCCHHCCCCEEEECC
VRQGIDAIFSTSKENITKISQLAGKTTEIPAGTNYGDMFESWNKNHPDKKINVKYSQRPL
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCH
ADRLSAISSGQIDFLFASKAPAENLIKEHAITGLVDTVPTDLDKQPEFKTYDYFILDNSQ
HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCH
SKLQKDLNVELKKLYDNGTLKKLSEQYFHDSHIPAADQFK
HHHHHHHCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8867804; 9384377 [H]