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The map label for this gene is yvdC

Identifier: 15674029

GI number: 15674029

Start: 2132812

End: 2133597

Strand: Direct

Name: yvdC

Synonym: L116216

Alternate gene names: 15674029

Gene position: 2132812-2133597 (Clockwise)

Preceding gene: 15674021

Following gene: 15674031

Centisome position: 90.16

GC content: 33.33

Gene sequence:

>786_bases
ATGTTTAATATAGAAAAACTTCAATCATTAGCCAAATATCGTTGGGTAATTGTAATTATTTTGGCGCTACTTTTTTCAGC
CCTATCTGTCAGTATTTTTCACTTGCCATTTTTAATGACAGCTCTCGTATTATCGATTGTTGGATTAATTTTTGCTTATC
ACAAATCAGTTTGGTTGGTGCTCTTTATTTTATCTAACTTACCAATGCTTGCGACAACCATTTTTGCTTATCAGCACCAT
TTCACAACCTTAGATACCGTCATCTTTTTCATTATCTTTTTACTTACGATTATTTCTTCTTATCTGATTGCTCGTAAAGC
TGATATTATCCCTAAAATAAGCTGGAAATATTTTCCTCCTTTAAAAATAATAATTGGTTTTGCTTTGCTTTTTCTGGTCT
CTATTCTGACAGGAATTTTTGCTCAAATTATCAATCAAAGTCCAACAACCAGTAATCAAGATTCACTAAATGAGCTACAA
AAAGTGATTCCAATTGCTGTCTTTGCGACCCAAACACTTGCTGCTGGTTTTTTAGAGGAACTTGTTTATCGGGTAGGAAT
TTTTGAAGTCATTTTCAAAAATCAAAAATATTTTGCTTTTTTAACGGCATTGCTCCTTTTTGCTTACATGCATGGTCCTA
CTGACCTCTACAGCTGGTTAACTTACGGTTTAATGAGTCTCGTGCTTACCAGTCTTTATGCTAAATATCGCAATTTTTAT
CTTAACATGAGTGTCCATCTTCTTTGGAATCTCTTTGGGTTAGTAATTGCGCTTGTGCTTAAATAA

Upstream 100 bases:

>100_bases
TATTTTACTACAATTTATTCAAGTTCAGATTAACAAAAGTTATCAACAAAAATGAAATATTTTCTTCTGCTGACAGCTAT
TACTATGCTATAATATTGAC

Downstream 100 bases:

>100_bases
AAAAAATACTGACAGAAATTCTGTCAGTATTTTTTTTATTTTTTAAAGATAAATCATTTTAAATAGAGCTACGGCTGCAA
GTGATGCAAGAATTGGTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MFNIEKLQSLAKYRWVIVIILALLFSALSVSIFHLPFLMTALVLSIVGLIFAYHKSVWLVLFILSNLPMLATTIFAYQHH
FTTLDTVIFFIIFLLTIISSYLIARKADIIPKISWKYFPPLKIIIGFALLFLVSILTGIFAQIINQSPTTSNQDSLNELQ
KVIPIAVFATQTLAAGFLEELVYRVGIFEVIFKNQKYFAFLTALLLFAYMHGPTDLYSWLTYGLMSLVLTSLYAKYRNFY
LNMSVHLLWNLFGLVIALVLK

Sequences:

>Translated_261_residues
MFNIEKLQSLAKYRWVIVIILALLFSALSVSIFHLPFLMTALVLSIVGLIFAYHKSVWLVLFILSNLPMLATTIFAYQHH
FTTLDTVIFFIIFLLTIISSYLIARKADIIPKISWKYFPPLKIIIGFALLFLVSILTGIFAQIINQSPTTSNQDSLNELQ
KVIPIAVFATQTLAAGFLEELVYRVGIFEVIFKNQKYFAFLTALLLFAYMHGPTDLYSWLTYGLMSLVLTSLYAKYRNFY
LNMSVHLLWNLFGLVIALVLK
>Mature_261_residues
MFNIEKLQSLAKYRWVIVIILALLFSALSVSIFHLPFLMTALVLSIVGLIFAYHKSVWLVLFILSNLPMLATTIFAYQHH
FTTLDTVIFFIIFLLTIISSYLIARKADIIPKISWKYFPPLKIIIGFALLFLVSILTGIFAQIINQSPTTSNQDSLNELQ
KVIPIAVFATQTLAAGFLEELVYRVGIFEVIFKNQKYFAFLTALLLFAYMHGPTDLYSWLTYGLMSLVLTSLYAKYRNFY
LNMSVHLLWNLFGLVIALVLK

Specific function: Unknown

COG id: COG1266

COG function: function code R; Predicted metal-dependent membrane protease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0177 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVDC_LACLA (Q9CE03)

Other databases:

- EMBL:   AE005176
- PIR:   G86880
- RefSeq:   NP_268204.1
- GeneID:   1115723
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L116216
- NMPDR:   fig|272623.1.peg.2101
- HOGENOM:   HBG108181
- OMA:   ICEEILC
- ProtClustDB:   CLSK698086
- BioCyc:   LLAC272623:L116216-MONOMER
- InterPro:   IPR003675

Pfam domain/function: PF02517 Abi

EC number: NA

Molecular weight: Translated: 29871; Mature: 29871

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xde09ec4)-; HASH(0xfd2ff54)-; HASH(0xf98af60)-; HASH(0xb9694e4)-; HASH(0xb983248)-; HASH(0xc7d38e0)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHH
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11337471