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The map label for this gene is yneE

Identifier: 15673292

GI number: 15673292

Start: 1343916

End: 1344890

Strand: Direct

Name: yneE

Synonym: L143624

Alternate gene names: 15673292

Gene position: 1343916-1344890 (Clockwise)

Preceding gene: 15673291

Following gene: 15673293

Centisome position: 56.81

GC content: 32.1

Gene sequence:

>975_bases
ATGAAAATAAGTATTGACCAACAGTTTCAAAACTTTCTCGAATTACATCATTTAGATTTGAACCTTCTTTTAGAAGAAGC
CCAAATTCCAAATTTGCTTTGGAAAGAGGAAATTGTTTTAACGAATCAACAATTTTATAAATTTCAAGAGGTCCTATCAA
AAAAATTGACTGATGAACAACTTCTTTTGATAAGTGATGTCCAAAATTTTGGATTATTTATGCCCATCTTTTTCGTCGCT
CTTTCTTCTGCAAATGGCTTACAAGCTATAAAACGTTTGGCAAAATATAAAAATGTCATTGCTCCAGTTGAAATTAAAGT
CAGTATTCAAGAAAAACATGTTCAAGTTGAATTAAATGATATTTCTGAAATACAAAATCTTTCACGTTTTTCTTTATTTA
ATGAGCAACTTATTATTTTAAGTATTCTAAGAACTGGAACAGGCCAAAATATTATTCCTGAAAAAGTAATCAGTCCTTAT
CCATTCAGTTCTTCAATTTTGGAAGTTTTTGGGATTTCTCCTGAGCTTTCAAAAAATGATAATCTTTTGAGTTTTAATCT
CCAAGATTTAGAACTACCTTTTTTGACCAGAAATAATAGTATGTGGCGGATGATAGAACCCGAACTGAATCGTCAGCTGG
AAGAAATCAAAACTCCTTCTGACTTCATCAATAGCCTTCATAAAGAAGTCCAACTCTTGATTCCTTCTGGAGACTGTTCC
ATTCAAAATGTAGCAAGAAAACTAGGAATTAGTAGCAGAACCCTTCAAAGAAATCTTGCACAAGCTGGTACTACTTTTAA
AGTCGAGTTACAATCCGTTCAGAAAAAAATGGCTCTCCATTTTTCAAAGGATTTAAATCTCACAACTGATGAAATTTCTT
ATCTCTTAGGATATTCTGAGGTCAGTTCTTTCACTCGAGCTTTTCGTAAATGGACGGGAATGACTCTGAATCAATATCGG
AAAAAACTGATTTAA

Upstream 100 bases:

>100_bases
GGTTTTGGAGCAAAGCCCCTTGTCTTTCTTCATACCATTCTGCCAACAAGAATTTTTGATTGGCTAATCATGCGGGCCAG
TTAATAAAATAAGGAAAATT

Downstream 100 bases:

>100_bases
AATAAAAACTAGGACAATATCCTAGTTTATTTCATTTATCGCATAACTTTTGGATTAGTAAAGCTGTCAGAAGAGCCGTC
ACTTGGAGAAGGAAACTCTG

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MKISIDQQFQNFLELHHLDLNLLLEEAQIPNLLWKEEIVLTNQQFYKFQEVLSKKLTDEQLLLISDVQNFGLFMPIFFVA
LSSANGLQAIKRLAKYKNVIAPVEIKVSIQEKHVQVELNDISEIQNLSRFSLFNEQLIILSILRTGTGQNIIPEKVISPY
PFSSSILEVFGISPELSKNDNLLSFNLQDLELPFLTRNNSMWRMIEPELNRQLEEIKTPSDFINSLHKEVQLLIPSGDCS
IQNVARKLGISSRTLQRNLAQAGTTFKVELQSVQKKMALHFSKDLNLTTDEISYLLGYSEVSSFTRAFRKWTGMTLNQYR
KKLI

Sequences:

>Translated_324_residues
MKISIDQQFQNFLELHHLDLNLLLEEAQIPNLLWKEEIVLTNQQFYKFQEVLSKKLTDEQLLLISDVQNFGLFMPIFFVA
LSSANGLQAIKRLAKYKNVIAPVEIKVSIQEKHVQVELNDISEIQNLSRFSLFNEQLIILSILRTGTGQNIIPEKVISPY
PFSSSILEVFGISPELSKNDNLLSFNLQDLELPFLTRNNSMWRMIEPELNRQLEEIKTPSDFINSLHKEVQLLIPSGDCS
IQNVARKLGISSRTLQRNLAQAGTTFKVELQSVQKKMALHFSKDLNLTTDEISYLLGYSEVSSFTRAFRKWTGMTLNQYR
KKLI
>Mature_324_residues
MKISIDQQFQNFLELHHLDLNLLLEEAQIPNLLWKEEIVLTNQQFYKFQEVLSKKLTDEQLLLISDVQNFGLFMPIFFVA
LSSANGLQAIKRLAKYKNVIAPVEIKVSIQEKHVQVELNDISEIQNLSRFSLFNEQLIILSILRTGTGQNIIPEKVISPY
PFSSSILEVFGISPELSKNDNLLSFNLQDLELPFLTRNNSMWRMIEPELNRQLEEIKTPSDFINSLHKEVQLLIPSGDCS
IQNVARKLGISSRTLQRNLAQAGTTFKVELQSVQKKMALHFSKDLNLTTDEISYLLGYSEVSSFTRAFRKWTGMTLNQYR
KKLI

Specific function: Probably activates the ArgJ gene that encodes ornithine acetyltransferase. Binds to its own promoter-operator region. Probably binds ornithine [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37321; Mature: 37321

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISIDQQFQNFLELHHLDLNLLLEEAQIPNLLWKEEIVLTNQQFYKFQEVLSKKLTDEQ
CCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHEECHHHHHHHHHHHHHHCCCCC
LLLISDVQNFGLFMPIFFVALSSANGLQAIKRLAKYKNVIAPVEIKVSIQEKHVQVELND
EEEEHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECEEEEEEHH
ISEIQNLSRFSLFNEQLIILSILRTGTGQNIIPEKVISPYPFSSSILEVFGISPELSKND
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCCC
NLLSFNLQDLELPFLTRNNSMWRMIEPELNRQLEEIKTPSDFINSLHKEVQLLIPSGDCS
CEEEEECCCCCCCEEECCCCEEEEECHHHHHHHHHCCCHHHHHHHHHHHEEEEECCCCCC
IQNVARKLGISSRTLQRNLAQAGTTFKVELQSVQKKMALHFSKDLNLTTDEISYLLGYSE
HHHHHHHHCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VSSFTRAFRKWTGMTLNQYRKKLI
HHHHHHHHHHHCCCCHHHHHHHCC
>Mature Secondary Structure
MKISIDQQFQNFLELHHLDLNLLLEEAQIPNLLWKEEIVLTNQQFYKFQEVLSKKLTDEQ
CCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHEECHHHHHHHHHHHHHHCCCCC
LLLISDVQNFGLFMPIFFVALSSANGLQAIKRLAKYKNVIAPVEIKVSIQEKHVQVELND
EEEEHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECEEEEEEHH
ISEIQNLSRFSLFNEQLIILSILRTGTGQNIIPEKVISPYPFSSSILEVFGISPELSKND
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCCC
NLLSFNLQDLELPFLTRNNSMWRMIEPELNRQLEEIKTPSDFINSLHKEVQLLIPSGDCS
CEEEEECCCCCCCEEECCCCEEEEECHHHHHHHHHCCCHHHHHHHHHHHEEEEECCCCCC
IQNVARKLGISSRTLQRNLAQAGTTFKVELQSVQKKMALHFSKDLNLTTDEISYLLGYSE
HHHHHHHHCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VSSFTRAFRKWTGMTLNQYRKKLI
HHHHHHHHHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9401045; 10984043 [H]