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The map label for this gene is yncB

Identifier: 15673271

GI number: 15673271

Start: 1322977

End: 1323723

Strand: Direct

Name: yncB

Synonym: L122632

Alternate gene names: 15673271

Gene position: 1322977-1323723 (Clockwise)

Preceding gene: 15673269

Following gene: 15673279

Centisome position: 55.93

GC content: 33.2

Gene sequence:

>747_bases
ATGAACTTATTAAAAACAAACTGGGAAGACTTTGGTTTATTTTTATTAGATAAAGCAATTACAATTTTATTAATTAGTAT
TCTTTTTTTTATTCTCTATCAAGCCGGCTCTCGTATCGTTAAACGCTTATTTAAAAATTATAGTGAGCAAAAATGGACAG
ATACTTCGAGAATTTTAACCCTCTCTCGACTGACAACCAGTGCCATCCATTATCTTACAGTTTTTCTTTATATCTATACT
GTTCTAGGAGTCATTGGAATTCCTGTTGCAAATATCCTTGCTGGTGCTGGTATTCTCGGAGTTGCTCTAGGTTTTGCGGG
GCGAGATTTAGTCGCTGATATTATCAATGGCTTCTTTATTATCGTTGAACATCAAATCAACGTTGGAGATACTGTGGCTT
TTGCTGGCCTTGACATCGAAGGGGTAGTAAAAACTGTAGGAATTCGTTCAATTACAGTAATTGGCGCTGATGGCGCAACG
ACTTTTATTCCTAATCGAAATATTGCTGCCCTCAAAAACTACTCATACAAAGAAAGAACTGTTAATCTTGATGTGCCAGT
AACAAGTGAAAATCTGATTGAAAGAAAAAATCAAATTATGGAAGTTAATGCAAATTATCCTCAACTTAAATATTTAGGAA
TTATCAACATTGAAGACAAACTCTTCTTAAGAACAAGTTTAACAGCCCCATTATCTAAGATTACTCCTTTAAAAATGGAG
ATTTTAGATAAATATTATGAAAAATAA

Upstream 100 bases:

>100_bases
AAAATATTCATGAAATTCAGTAAAAGTTCAAACAATTTTTTCAAATATAGTCAATTTCTCTATAAATGAATTTATAAAAT
TACTGAACAAAGGAGCAAAA

Downstream 100 bases:

>100_bases
TCACTGACAAACTTATGACTAAATAGAAAAAAACAAAATTTATCATCAAAATAAAAGCGATATAGATTAACTATATCGCT
TTTGATTTTTCTTAAGATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MNLLKTNWEDFGLFLLDKAITILLISILFFILYQAGSRIVKRLFKNYSEQKWTDTSRILTLSRLTTSAIHYLTVFLYIYT
VLGVIGIPVANILAGAGILGVALGFAGRDLVADIINGFFIIVEHQINVGDTVAFAGLDIEGVVKTVGIRSITVIGADGAT
TFIPNRNIAALKNYSYKERTVNLDVPVTSENLIERKNQIMEVNANYPQLKYLGIINIEDKLFLRTSLTAPLSKITPLKME
ILDKYYEK

Sequences:

>Translated_248_residues
MNLLKTNWEDFGLFLLDKAITILLISILFFILYQAGSRIVKRLFKNYSEQKWTDTSRILTLSRLTTSAIHYLTVFLYIYT
VLGVIGIPVANILAGAGILGVALGFAGRDLVADIINGFFIIVEHQINVGDTVAFAGLDIEGVVKTVGIRSITVIGADGAT
TFIPNRNIAALKNYSYKERTVNLDVPVTSENLIERKNQIMEVNANYPQLKYLGIINIEDKLFLRTSLTAPLSKITPLKME
ILDKYYEK
>Mature_248_residues
MNLLKTNWEDFGLFLLDKAITILLISILFFILYQAGSRIVKRLFKNYSEQKWTDTSRILTLSRLTTSAIHYLTVFLYIYT
VLGVIGIPVANILAGAGILGVALGFAGRDLVADIINGFFIIVEHQINVGDTVAFAGLDIEGVVKTVGIRSITVIGADGAT
TFIPNRNIAALKNYSYKERTVNLDVPVTSENLIERKNQIMEVNANYPQLKYLGIINIEDKLFLRTSLTAPLSKITPLKME
ILDKYYEK

Specific function: May play a role in resistance to osmotic downshock [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 27696; Mature: 27696

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLKTNWEDFGLFLLDKAITILLISILFFILYQAGSRIVKRLFKNYSEQKWTDTSRILT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
LSRLTTSAIHYLTVFLYIYTVLGVIGIPVANILAGAGILGVALGFAGRDLVADIINGFFI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHCCEEE
IVEHQINVGDTVAFAGLDIEGVVKTVGIRSITVIGADGATTFIPNRNIAALKNYSYKERT
EEEEECCCCCEEEEECCCHHHHHHHHCCEEEEEEECCCCEEECCCCCCHHHCCCCCCCEE
VNLDVPVTSENLIERKNQIMEVNANYPQLKYLGIINIEDKLFLRTSLTAPLSKITPLKME
EEEECCCCHHHHHHHHHHEEEECCCCCCEEEEEEEECCCCEEEEECCCCCHHHCCCHHHH
ILDKYYEK
HHHHHHCC
>Mature Secondary Structure
MNLLKTNWEDFGLFLLDKAITILLISILFFILYQAGSRIVKRLFKNYSEQKWTDTSRILT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
LSRLTTSAIHYLTVFLYIYTVLGVIGIPVANILAGAGILGVALGFAGRDLVADIINGFFI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHCCEEE
IVEHQINVGDTVAFAGLDIEGVVKTVGIRSITVIGADGATTFIPNRNIAALKNYSYKERT
EEEEECCCCCEEEEECCCHHHHHHHHCCEEEEEEECCCCEEECCCCCCHHHCCCCCCCEE
VNLDVPVTSENLIERKNQIMEVNANYPQLKYLGIINIEDKLFLRTSLTAPLSKITPLKME
EEEECCCCHHHHHHHHHHEEEECCCCCCEEEEEEEECCCCEEEEECCCCCHHHCCCHHHH
ILDKYYEK
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]