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The map label for this gene is ykiD

Identifier: 15673055

GI number: 15673055

Start: 1085190

End: 1085963

Strand: Direct

Name: ykiD

Synonym: L84937

Alternate gene names: 15673055

Gene position: 1085190-1085963 (Clockwise)

Preceding gene: 15673054

Following gene: 15673059

Centisome position: 45.87

GC content: 36.3

Gene sequence:

>774_bases
ATGAAAATTTCTGATTTTATGCTTGAATACGAAAAATTTTGCCCCAAAGAATTAGCTGTTGAAGGTGATCCTGTAGGTTT
ACAAGTTGGGAACCCAAACGATGAACTAACAAAAGTTTTGGTAACCTTGGATATTCGTGAGCAAACAGTGGCAGAAGCAA
AAGCGCTGGGTGTGAATCTGATTATTGCTAAACATCCTTTGATTTTCCGCCCCCTTTCTGCATTGACTTCAATGAATGAT
CAGGAAAAATTAGTTTTGGACTTGGCGCGAGCTGGAATTGCTGTCTATACCAGCCATACAAATATTGATGTGGTTACTGG
TGGTTTAAATGATTATTTCAGTCAGTTACTTGGAATGACTGATATTGAAGTGCTAGATGACGAAGAAGGATTGGGCCGTG
TTGGAAATATTGAACTGACAGAATTATCAGTGCTGACAGAAAAAGTGAAAGCATCATTTGGGTTAGATAGATTACGTCTT
ATCACTTATGACCATAATTTGACTCAAAAAATTGGAAGAATTGCAATTTGTGGCGGTTCAGGTGGAAAATTATGGCCTAA
AGCTTTGGAAAAAAAGGCAGATATTTACATAACAGGAGATATTTATTATCATGTTGGTCATGATATGCTTTCAGCTGGTT
TATTAGGAATAGACCCTGGTCATTATATTGAGCATGCTTTTATTAGATTAGTTGCTGACAAGCTTCGTTCTTTTGATATG
GGTGTCAAGATTTATGAAAGCCAAGAAAAGACAAATCCATTTTATGACATATAA

Upstream 100 bases:

>100_bases
TAAATACTTTGAATAAAATTATTGCTCGTTTGCCTGAAGAACAAGCCGAAAAACGTCAAGAGGTTTTAAATCAAATTGCG
AGAATTGAGGAAGTGCTTCG

Downstream 100 bases:

>100_bases
AAAAGACCCTCTTGGAGGGTCTTTTTGGTTGGAACTAATTAGCTAGCTTTTTGTTTACCACGGAAGTCAACGATTAAAAG
GTTAGGGCTAAGCAATTCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKISDFMLEYEKFCPKELAVEGDPVGLQVGNPNDELTKVLVTLDIREQTVAEAKALGVNLIIAKHPLIFRPLSALTSMND
QEKLVLDLARAGIAVYTSHTNIDVVTGGLNDYFSQLLGMTDIEVLDDEEGLGRVGNIELTELSVLTEKVKASFGLDRLRL
ITYDHNLTQKIGRIAICGGSGGKLWPKALEKKADIYITGDIYYHVGHDMLSAGLLGIDPGHYIEHAFIRLVADKLRSFDM
GVKIYESQEKTNPFYDI

Sequences:

>Translated_257_residues
MKISDFMLEYEKFCPKELAVEGDPVGLQVGNPNDELTKVLVTLDIREQTVAEAKALGVNLIIAKHPLIFRPLSALTSMND
QEKLVLDLARAGIAVYTSHTNIDVVTGGLNDYFSQLLGMTDIEVLDDEEGLGRVGNIELTELSVLTEKVKASFGLDRLRL
ITYDHNLTQKIGRIAICGGSGGKLWPKALEKKADIYITGDIYYHVGHDMLSAGLLGIDPGHYIEHAFIRLVADKLRSFDM
GVKIYESQEKTNPFYDI
>Mature_257_residues
MKISDFMLEYEKFCPKELAVEGDPVGLQVGNPNDELTKVLVTLDIREQTVAEAKALGVNLIIAKHPLIFRPLSALTSMND
QEKLVLDLARAGIAVYTSHTNIDVVTGGLNDYFSQLLGMTDIEVLDDEEGLGRVGNIELTELSVLTEKVKASFGLDRLRL
ITYDHNLTQKIGRIAICGGSGGKLWPKALEKKADIYITGDIYYHVGHDMLSAGLLGIDPGHYIEHAFIRLVADKLRSFDM
GVKIYESQEKTNPFYDI

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family

Homologues:

Organism=Drosophila melanogaster, GI19921430, Length=211, Percent_Identity=32.2274881516588, Blast_Score=94, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1073_LACLA (Q9CGM3)

Other databases:

- EMBL:   AE005176
- PIR:   A86759
- RefSeq:   NP_267229.1
- ProteinModelPortal:   Q9CGM3
- SMR:   Q9CGM3
- GeneID:   1114713
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L84937
- NMPDR:   fig|272623.1.peg.1105
- HOGENOM:   HBG554751
- OMA:   YYHVGHD
- ProtClustDB:   CLSK697561
- BioCyc:   LLAC272623:L84937-MONOMER
- InterPro:   IPR002678
- PANTHER:   PTHR13799
- TIGRFAMs:   TIGR00486

Pfam domain/function: PF01784 NIF3; SSF102705 interacting_NIF3

EC number: NA

Molecular weight: Translated: 28468; Mature: 28468

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISDFMLEYEKFCPKELAVEGDPVGLQVGNPNDELTKVLVTLDIREQTVAEAKALGVNL
CCHHHHHHHHHHCCCHHHCCCCCCEEEEECCCCHHHEEEEEEEECHHHHHHHHHHCCEEE
IIAKHPLIFRPLSALTSMNDQEKLVLDLARAGIAVYTSHTNIDVVTGGLNDYFSQLLGMT
EEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCCEEEEECCHHHHHHHHHCCC
DIEVLDDEEGLGRVGNIELTELSVLTEKVKASFGLDRLRLITYDHNLTQKIGRIAICGGS
CEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHCEEEEEECC
GGKLWPKALEKKADIYITGDIYYHVGHDMLSAGLLGIDPGHYIEHAFIRLVADKLRSFDM
CCCCCHHHHCCCCCEEEEEEEEEECCHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHCC
GVKIYESQEKTNPFYDI
CEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKISDFMLEYEKFCPKELAVEGDPVGLQVGNPNDELTKVLVTLDIREQTVAEAKALGVNL
CCHHHHHHHHHHCCCHHHCCCCCCEEEEECCCCHHHEEEEEEEECHHHHHHHHHHCCEEE
IIAKHPLIFRPLSALTSMNDQEKLVLDLARAGIAVYTSHTNIDVVTGGLNDYFSQLLGMT
EEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCCEEEEECCHHHHHHHHHCCC
DIEVLDDEEGLGRVGNIELTELSVLTEKVKASFGLDRLRLITYDHNLTQKIGRIAICGGS
CEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHCEEEEEECC
GGKLWPKALEKKADIYITGDIYYHVGHDMLSAGLLGIDPGHYIEHAFIRLVADKLRSFDM
CCCCCHHHHCCCCCEEEEEEEEEECCHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHCC
GVKIYESQEKTNPFYDI
CEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471