Click here to switch to the map view.

The map label for this gene is radC

Identifier: 15672989

GI number: 15672989

Start: 1035763

End: 1036443

Strand: Direct

Name: radC

Synonym: L0306

Alternate gene names: 15672989

Gene position: 1035763-1036443 (Clockwise)

Preceding gene: 15672988

Following gene: 15672994

Centisome position: 43.78

GC content: 34.95

Gene sequence:

>681_bases
ATGTATGAACTAAAAGAAAATCCGTATCCGATGCAACCTAGGGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA
TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCAAAATCC
ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGGATACAAACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC
CAGAGAATATGGCTTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAGCATCTTGTGGCGACTTATTTAGATGGTC
AAAATCGAATTATTGAAAAAAAGACAATTTTTATAGGGGCGGTTAATCAGGCAACTGCAAGCCCTAGAGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTAAAACCAAGTCAAGCTGA
TAAAATATTTACTACCAAAATAAAAAAATCTTGCGAGGATGTGGGGATCAATTTTATTGATCATATTATTGTAGGGGCTG
GTAATTATTTTAGCTTTCGGGAAGAAGAGATCAGAAAATGA

Upstream 100 bases:

>100_bases
ATGATAACTAAAAATAAAAAGTTCTGAGATTCATCAGAACTTTTTTGGTTAATTAATCTTTTGTCAGTGACAAAGGCCAG
ATTTTTCCGTATATAATAGT

Downstream 100 bases:

>100_bases
AGGATTATATAACAAACAATCACTTCTCAACTATAAAGCAAAGAAAAAGAACAGTCAATAAAAACTGTTCTTTTATTTTG
TACTAATTTAGTTTTCTTGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLKPSQADKIFTTKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Sequences:

>Translated_226_residues
MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLKPSQADKIFTTKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK
>Mature_226_residues
MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLKPSQADKIFTTKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=221, Percent_Identity=37.10407239819, Blast_Score=152, Evalue=1e-38,
Organism=Escherichia coli, GI1788312, Length=116, Percent_Identity=36.2068965517241, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI2367100, Length=116, Percent_Identity=37.9310344827586, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788997, Length=116, Percent_Identity=35.3448275862069, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1007_LACLA (Q9CGT5)

Other databases:

- EMBL:   AE005176
- PIR:   G86750
- RefSeq:   NP_267163.1
- ProteinModelPortal:   Q9CGT5
- SMR:   Q9CGT5
- GeneID:   1114638
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L0306
- NMPDR:   fig|272623.1.peg.1030
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- BioCyc:   LLAC272623:L0306-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25802; Mature: 25802

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LRKASINELREISGIGLAKSIEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHC
FEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILYHAIKNLSVGLLVAHNHPSGN
CCHHHEEEEEECCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCC
LKPSQADKIFTTKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHCC
>Mature Secondary Structure
MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LRKASINELREISGIGLAKSIEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQN
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHC
FEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILYHAIKNLSVGLLVAHNHPSGN
CCHHHEEEEEECCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCC
LKPSQADKIFTTKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471