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The map label for this gene is rliC

Identifier: 15672707

GI number: 15672707

Start: 730327

End: 731367

Strand: Direct

Name: rliC

Synonym: L0147

Alternate gene names: 15672707

Gene position: 730327-731367 (Clockwise)

Preceding gene: 15672706

Following gene: 15672715

Centisome position: 30.87

GC content: 32.18

Gene sequence:

>1041_bases
ATGACTTACAAAAATGTGAACATCAGTCGCTTCTTGTTAGAAACGAATATTATGACAAAAATCACTTTAAAAGAAATTGC
GGAAATGGCTGGTGTGTCAGTGATGACTGTTTCAAATGTTATTCGTGGAAAAAATTCACGCGTTTCGGTAGAAACAAAAG
CCAAAATTCAAGCCTTAGTAAAGAAATATAATTATGTTCCAAATCAAAATGCTTCTAATTTACGTTCAGGAAAATCAAGA
TTGATTGGCGTGCTATTTTACAATAAGTCTCAAACGATAGATTTTACTGACCCTTTTATATCTTCTGTTTTGACGGGGAT
TGAACGAATGGCTAAAGAAAAAGGCTATTTTACAATGGTTCATACTGTCCAAAGTGCAAAGGGGATTGAGCAGCTCCAAA
GAAATTGGGCTTTTGCTGGTTTTATTGTAGTTGGAGCTTCAAATAGAGATTTCTTCAAAATAGACGATGCTATTTTAACA
CCAGTGAGTTATATCGATACTTATTTTGAAAAAGCGAAAAAATTAGATGGAAAGTTAAGAAATTTTATTGGAACAGATGA
GGAAAAAATTTCAGAAAGTATTGCCAATTATCTCTCCAAAATGGGACATAAAAAAGTTCTTTTCTTTAGTTTTGACTTTA
ATCAAGAGGAACCAAGTGTCATTGAAAAACGATACTGTGCATTTCGTAAATTTTTTAAAGGAGAAATCCTATTCCTGACA
ACAAAAAGTGCGGATTATCAAGAAATTTTGAAAAGTGTATCAGAATATTTAATGGAGCAACCTTTTACGGCTATTTATAG
TACAGCTGATATTCTTGCAGCAAAATTAAATCAAATATTTAAGGATATTTCGATTGTAGGAGTTGATAATGCAGAATTTG
ATGAATTTATTTCACCTAAATTGACCACAGTGGCAATCGACCAAGTTGAAAAAGGGAAGATGGCAATGTCTAATTTGATT
GATTCAATTGAAAATGAAATTTCTGAGGATTATATTTCTGATAGTTTGCTTCTCGTTCGGGATAGCGTAAAAAAACTCTG
A

Upstream 100 bases:

>100_bases
GATTGAAAATGCAGAGTTAGAAGATAGTCTATTTGAATTACTTTATAGTGGAAAATAAGGAAGAACCTTTGTATAATGAG
ACTACAGGGCTTCTGATAAA

Downstream 100 bases:

>100_bases
CTATTTGTCAGAGTTTTTTTGTGGTACCAAAGCATTGACCACTGTGATTTGAGAAATGAGCGTTTCATTTTCGTCAGTGA
TTTTGATTTCCCAGACATGG

Product: LacI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MTYKNVNISRFLLETNIMTKITLKEIAEMAGVSVMTVSNVIRGKNSRVSVETKAKIQALVKKYNYVPNQNASNLRSGKSR
LIGVLFYNKSQTIDFTDPFISSVLTGIERMAKEKGYFTMVHTVQSAKGIEQLQRNWAFAGFIVVGASNRDFFKIDDAILT
PVSYIDTYFEKAKKLDGKLRNFIGTDEEKISESIANYLSKMGHKKVLFFSFDFNQEEPSVIEKRYCAFRKFFKGEILFLT
TKSADYQEILKSVSEYLMEQPFTAIYSTADILAAKLNQIFKDISIVGVDNAEFDEFISPKLTTVAIDQVEKGKMAMSNLI
DSIENEISEDYISDSLLLVRDSVKKL

Sequences:

>Translated_346_residues
MTYKNVNISRFLLETNIMTKITLKEIAEMAGVSVMTVSNVIRGKNSRVSVETKAKIQALVKKYNYVPNQNASNLRSGKSR
LIGVLFYNKSQTIDFTDPFISSVLTGIERMAKEKGYFTMVHTVQSAKGIEQLQRNWAFAGFIVVGASNRDFFKIDDAILT
PVSYIDTYFEKAKKLDGKLRNFIGTDEEKISESIANYLSKMGHKKVLFFSFDFNQEEPSVIEKRYCAFRKFFKGEILFLT
TKSADYQEILKSVSEYLMEQPFTAIYSTADILAAKLNQIFKDISIVGVDNAEFDEFISPKLTTVAIDQVEKGKMAMSNLI
DSIENEISEDYISDSLLLVRDSVKKL
>Mature_345_residues
TYKNVNISRFLLETNIMTKITLKEIAEMAGVSVMTVSNVIRGKNSRVSVETKAKIQALVKKYNYVPNQNASNLRSGKSRL
IGVLFYNKSQTIDFTDPFISSVLTGIERMAKEKGYFTMVHTVQSAKGIEQLQRNWAFAGFIVVGASNRDFFKIDDAILTP
VSYIDTYFEKAKKLDGKLRNFIGTDEEKISESIANYLSKMGHKKVLFFSFDFNQEEPSVIEKRYCAFRKFFKGEILFLTT
KSADYQEILKSVSEYLMEQPFTAIYSTADILAAKLNQIFKDISIVGVDNAEFDEFISPKLTTVAIDQVEKGKMAMSNLID
SIENEISEDYISDSLLLVRDSVKKL

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=348, Percent_Identity=24.4252873563218, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790194, Length=324, Percent_Identity=24.3827160493827, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787906, Length=216, Percent_Identity=27.7777777777778, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786268, Length=307, Percent_Identity=25.4071661237785, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI48994940, Length=325, Percent_Identity=23.0769230769231, Blast_Score=72, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 39261; Mature: 39129

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYKNVNISRFLLETNIMTKITLKEIAEMAGVSVMTVSNVIRGKNSRVSVETKAKIQALV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEHHHHHHHHHH
KKYNYVPNQNASNLRSGKSRLIGVLFYNKSQTIDFTDPFISSVLTGIERMAKEKGYFTMV
HHHCCCCCCCHHHHHCCHHHEEEEEEECCCCCEECCHHHHHHHHHHHHHHHHHCCCEEEH
HTVQSAKGIEQLQRNWAFAGFIVVGASNRDFFKIDDAILTPVSYIDTYFEKAKKLDGKLR
HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHH
NFIGTDEEKISESIANYLSKMGHKKVLFFSFDFNQEEPSVIEKRYCAFRKFFKGEILFLT
HHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEE
TKSADYQEILKSVSEYLMEQPFTAIYSTADILAAKLNQIFKDISIVGVDNAEFDEFISPK
ECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHCCCC
LTTVAIDQVEKGKMAMSNLIDSIENEISEDYISDSLLLVRDSVKKL
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure 
TYKNVNISRFLLETNIMTKITLKEIAEMAGVSVMTVSNVIRGKNSRVSVETKAKIQALV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEHHHHHHHHHH
KKYNYVPNQNASNLRSGKSRLIGVLFYNKSQTIDFTDPFISSVLTGIERMAKEKGYFTMV
HHHCCCCCCCHHHHHCCHHHEEEEEEECCCCCEECCHHHHHHHHHHHHHHHHHCCCEEEH
HTVQSAKGIEQLQRNWAFAGFIVVGASNRDFFKIDDAILTPVSYIDTYFEKAKKLDGKLR
HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHH
NFIGTDEEKISESIANYLSKMGHKKVLFFSFDFNQEEPSVIEKRYCAFRKFFKGEILFLT
HHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEE
TKSADYQEILKSVSEYLMEQPFTAIYSTADILAAKLNQIFKDISIVGVDNAEFDEFISPK
ECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHCCCC
LTTVAIDQVEKGKMAMSNLIDSIENEISEDYISDSLLLVRDSVKKL
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]