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The map label for this gene is ybeD

Identifier: 15672131

GI number: 15672131

Start: 145304

End: 145849

Strand: Direct

Name: ybeD

Synonym: L145301

Alternate gene names: NA

Gene position: 145304-145849 (Clockwise)

Preceding gene: 15672126

Following gene: 15672133

Centisome position: 6.14

GC content: 34.07

Gene sequence:

>546_bases
ATGAATACACGTGAAAAGATATTAGGAAAAACAGAAGAATTTATCTTAGAGAATGGAATAGAGAAACTCACCATTTCAAA
AATTGCTAAGGAACTCAATATTAGTCAACCAGCTATTTATAAGCACTTTAAAAGTAAAGATGAACTTTTAACGATACTTG
CCCTTCGTTGGCTCAATGGTCAGACACTTGTAAAAATATTTCCTTTTGACACAAGCAAGTATGAACATCAAAAAGAGATT
GTTCATGATTGGCTCTGGTCAGTCGCCATTGCCAAATATGAAGCACATCGAAAAACTCCAGAAATGTTTGCCTTATACAC
AACCTACATTGGAGAAAATTTAGAATTGGGACGTAAACATATTTTAGAAATGGTTGAGAGTCTAAAGACAGCTGCTAAAT
TTGAAAGTGAAGAGGAAGCTGCTGCATATATTCAAGCTTTTGTTTATTTTCATCACCCAAAAATTGCCCCACAGTGGGAT
GACCAATTTCAAAATCAATTTGAAAATCTCTGGACTTTGCTTGAACCGAATTTAAATGCCTTTTAA

Upstream 100 bases:

>100_bases
TTTATGAGGTTATTTTTTTTAACTTTTATAACCAACAAAATGAATTATAAACCAGAAAGTTATATTTGTCAAGAATTATA
ACTTGTGTTACAATTAATTT

Downstream 100 bases:

>100_bases
AGTTACTGACAGACTTTTTGGATTTCTGTCAGTAACTTTTGCGATTCTGTTAGTAAAAAAAACCTGTCAATTGACAGGTT
TTTATTCTTTAATTTGGAAA

Product: transcription regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Tetr-Family Transcriptional Regulator

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MNTREKILGKTEEFILENGIEKLTISKIAKELNISQPAIYKHFKSKDELLTILALRWLNGQTLVKIFPFDTSKYEHQKEI
VHDWLWSVAIAKYEAHRKTPEMFALYTTYIGENLELGRKHILEMVESLKTAAKFESEEEAAAYIQAFVYFHHPKIAPQWD
DQFQNQFENLWTLLEPNLNAF

Sequences:

>Translated_181_residues
MNTREKILGKTEEFILENGIEKLTISKIAKELNISQPAIYKHFKSKDELLTILALRWLNGQTLVKIFPFDTSKYEHQKEI
VHDWLWSVAIAKYEAHRKTPEMFALYTTYIGENLELGRKHILEMVESLKTAAKFESEEEAAAYIQAFVYFHHPKIAPQWD
DQFQNQFENLWTLLEPNLNAF
>Mature_181_residues
MNTREKILGKTEEFILENGIEKLTISKIAKELNISQPAIYKHFKSKDELLTILALRWLNGQTLVKIFPFDTSKYEHQKEI
VHDWLWSVAIAKYEAHRKTPEMFALYTTYIGENLELGRKHILEMVESLKTAAKFESEEEAAAYIQAFVYFHHPKIAPQWD
DQFQNQFENLWTLLEPNLNAF

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21319; Mature: 21319

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTREKILGKTEEFILENGIEKLTISKIAKELNISQPAIYKHFKSKDELLTILALRWLNG
CCCHHHHHCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCC
QTLVKIFPFDTSKYEHQKEIVHDWLWSVAIAKYEAHRKTPEMFALYTTYIGENLELGRKH
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHH
ILEMVESLKTAAKFESEEEAAAYIQAFVYFHHPKIAPQWDDQFQNQFENLWTLLEPNLNA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
F
C
>Mature Secondary Structure
MNTREKILGKTEEFILENGIEKLTISKIAKELNISQPAIYKHFKSKDELLTILALRWLNG
CCCHHHHHCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCC
QTLVKIFPFDTSKYEHQKEIVHDWLWSVAIAKYEAHRKTPEMFALYTTYIGENLELGRKH
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHH
ILEMVESLKTAAKFESEEEAAAYIQAFVYFHHPKIAPQWDDQFQNQFENLWTLLEPNLNA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA