| Definition | Lactococcus lactis subsp. lactis Il1403, complete genome. |
|---|---|
| Accession | NC_002662 |
| Length | 2,365,589 |
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The map label for this gene is ps105
Identifier: 15672011
GI number: 15672011
Start: 37664
End: 39292
Strand: Reverse
Name: ps105
Synonym: L37667
Alternate gene names: NA
Gene position: 39292-37664 (Counterclockwise)
Preceding gene: 15672012
Following gene: 15672010
Centisome position: 1.66
GC content: 40.52
Gene sequence:
>1629_bases ATGACAGACCAATTAGAAAAACTTGTGGCAGAAACACCACAGGAAAACGTAAGAAGTCCAAAACCTAAAATAGAGGACTT CACAGATTATGGCGAAGACGGCAAAAAAGTCGTTAATGTCGCAGGTTATCAGGAATGCTTAAAAGACTGGCTGGAACAAG AAAAAGAAATCATCAATAGCCCTGACTATGTCAAAGCACATACTCAAACGCTTAGAGCGGTTAAAAAACTATTCTTTGAA CACCGTAACTTATTTTTAAGCACACCTAAGGAAGACGGCAACGCACCCAAGTCACTAAGTCCCTTAGATACGGCTAGAAT CATCTATAAAACGCTAAAAGTCATCAAATTAGACCACCAAAGCGGACTGTTAGGCGTTTACAACCCTGAACTAGGCATAT ATGAAACAAACGAAAACTTCTTTCATCGGCTCATTTATTGGCTAGAACCGTCATACAGTCAGGCACGGTCTAAAGAGGTC CTCTTTAAACTTGAAACTTTAGCAGAGGTTAAGCAACAAACCACAGAAGCTCATCTTATCCCAGTTGCGAACGGTATTTT CAATAAGAAAACCCAGCAATTAGAGCCGTTTAGTCCCAAGTATGTCTTTACCTCAACCATTGCGACCAAGTACAACGACA AAGCAAAAGTACCCAATATCAACGGTTGGAACGTAGACGGCTGGCTGTTAGACCTCATGAGTGGAGATAAGGAGCTTGTT AGCCTTTTATGGCAGATTATTTCCGCAAGTACCAACGGCAATTACTCCTATCGTAAAGGCGTTTGGCTCGTCGGTAAAGG AAATGACGGCAAAGGTACATTTCAGAGCCTCATCATGAACTTAATCGGACGTGAGAACGTGGCAAGTGTCAAAGCTGAAC AATTTGCGGAACGGTTCGCCCTTTCCCAAGTCGTTGGCAAAACTTGTATTATTGGAGATGACAGCCAAGTCAGTTACTTA GACAACGCAGGAAATTACTTTTCAGTAGTGACTGGCGACCCAGTACCGATTGAAGCGAAAGGAAAGCAACCCACCTTAGC AGTATTTAATAAGCTGGTTATACAATCCACTAACTTCTTGCCAAAGTTTAGAAATAAGTCAAATGGAACATACAGACGTT TGCTTATCGTGCCTTTTGAAAAGTCTTTTACCGCAGATAATGACGATTGGAAAATAAAGGATGATTATATTAAACGCAAA GACGTTTTAGAGTATGTCCTTAAAATCGCTTTATCGCTTAACTTTGAGAAGTTTGACGAACCGAAAGCCACACAAGGGCT GTTAGATGACTTTAAAATCAGCAATGACAATGTATTGGCTTTTGTAAATGATATGTTTGAGGAGTTCGTCAGTGATTTTC TACCGACCGCCTTTATAAGCGCCTTATATCGTGCATGGTGTGAAGATGAGGGAGTGAAGCCCTTTACTAAGCGAGAGTTT GAGAATAAACTACCTGATTATGTCAAAGACCAATGGAAAAAGACCGTGCAAAGACCAAATAGCGCAGGCTTTAATAGAGC TGTCGATTTACATCGAGCCAATGAAATGGAATTGTTTAGACGGTTGTTTTATTGGGACGATGAGAAACATAAAAAAGTCA CTAAAGGTTATTCCCGCAAGAAAAAATAA
Upstream 100 bases:
>100_bases TTATTGCGAACCTTTAACAATCGAACCAGTCCGCCCTTACCTGATGACGAGCTGGCAACTATTTGGAAAAGTGTATTCAA GATGAAATAGAAAGGAAGTC
Downstream 100 bases:
>100_bases AAGTGTTACTGAAAATCGGTAACACGTTACTATTAGAAGTAACAGCTTTAACCCTATGGTTAAGCCATTTATAGGTATCT GTTACTCTGTTACCGCAAAA
Product: DNA primase
Products: NA
Alternate protein names: Primase; Phage/Plasmid Primase P4 Family; P4 Family Phage/Plasmid Primase; Phage Primase; Phage/Plasmid Primase; Phage Replication Protein; Phage DNA Polymerase; Replication Protein; P4-Specific DNA Primase; Phage/Plasmid Primase P4-Like Protein; Phage-Related DNA Primase; RepA Protein; Prophage; ATPase; Prophage Lsa1 DNA Primase; Phage-Related DNA Primase/Helicase; Prophage DNA Primase; Phage Associated DNA Primase; Nucleic Acid Independent Nucleoside Triphosphatase; Plasmid/Phage Primase; Phage DNA Primase; Phage Associated Protein; Primase Superantigen-Encoding Pathogenicity Islands SaPI; Prophage Lp4 DNA Primase/Helicase; Nucleoside Triphosphatase D5 Family; DNA Primase Domain-Containing Protein; Phage DNA Primase-Like Protein
Number of amino acids: Translated: 542; Mature: 541
Protein sequence:
>542_residues MTDQLEKLVAETPQENVRSPKPKIEDFTDYGEDGKKVVNVAGYQECLKDWLEQEKEIINSPDYVKAHTQTLRAVKKLFFE HRNLFLSTPKEDGNAPKSLSPLDTARIIYKTLKVIKLDHQSGLLGVYNPELGIYETNENFFHRLIYWLEPSYSQARSKEV LFKLETLAEVKQQTTEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDKELV SLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAERFALSQVVGKTCIIGDDSQVSYL DNAGNYFSVVTGDPVPIEAKGKQPTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRK DVLEYVLKIALSLNFEKFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISALYRAWCEDEGVKPFTKREF ENKLPDYVKDQWKKTVQRPNSAGFNRAVDLHRANEMELFRRLFYWDDEKHKKVTKGYSRKKK
Sequences:
>Translated_542_residues MTDQLEKLVAETPQENVRSPKPKIEDFTDYGEDGKKVVNVAGYQECLKDWLEQEKEIINSPDYVKAHTQTLRAVKKLFFE HRNLFLSTPKEDGNAPKSLSPLDTARIIYKTLKVIKLDHQSGLLGVYNPELGIYETNENFFHRLIYWLEPSYSQARSKEV LFKLETLAEVKQQTTEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDKELV SLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAERFALSQVVGKTCIIGDDSQVSYL DNAGNYFSVVTGDPVPIEAKGKQPTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRK DVLEYVLKIALSLNFEKFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISALYRAWCEDEGVKPFTKREF ENKLPDYVKDQWKKTVQRPNSAGFNRAVDLHRANEMELFRRLFYWDDEKHKKVTKGYSRKKK >Mature_541_residues TDQLEKLVAETPQENVRSPKPKIEDFTDYGEDGKKVVNVAGYQECLKDWLEQEKEIINSPDYVKAHTQTLRAVKKLFFEH RNLFLSTPKEDGNAPKSLSPLDTARIIYKTLKVIKLDHQSGLLGVYNPELGIYETNENFFHRLIYWLEPSYSQARSKEVL FKLETLAEVKQQTTEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDKELVS LLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAERFALSQVVGKTCIIGDDSQVSYLD NAGNYFSVVTGDPVPIEAKGKQPTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKD VLEYVLKIALSLNFEKFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISALYRAWCEDEGVKPFTKREFE NKLPDYVKDQWKKTVQRPNSAGFNRAVDLHRANEMELFRRLFYWDDEKHKKVTKGYSRKKK
Specific function: Unknown
COG id: COG3378
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62322; Mature: 62191
Theoretical pI: Translated: 8.77; Mature: 8.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDQLEKLVAETPQENVRSPKPKIEDFTDYGEDGKKVVNVAGYQECLKDWLEQEKEIINS CCHHHHHHHHHCCHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC PDYVKAHTQTLRAVKKLFFEHRNLFLSTPKEDGNAPKSLSPLDTARIIYKTLKVIKLDHQ CCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECC SGLLGVYNPELGIYETNENFFHRLIYWLEPSYSQARSKEVLFKLETLAEVKQQTTEAHLI CCEEEEECCCCCEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEE PVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDKELV ECCCCHHCCCHHCCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHH SLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAERFA HHHHHHHHCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPTLAVFNKLVIQSTNFL HHHHHCCEEEECCCCCCHHCCCCCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCC PKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKDVLEYVLKIALSLNFEKFDE CCCCCCCCCCEEEEEEEECCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCHHHCCC PKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISALYRAWCEDEGVKPFTKREF CCHHHHHHHHCEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH ENKLPDYVKDQWKKTVQRPNSAGFNRAVDLHRANEMELFRRLFYWDDEKHKKVTKGYSRK HHCCHHHHHHHHHHHHCCCCCCCCCCEEHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCC KK CC >Mature Secondary Structure TDQLEKLVAETPQENVRSPKPKIEDFTDYGEDGKKVVNVAGYQECLKDWLEQEKEIINS CHHHHHHHHHCCHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC PDYVKAHTQTLRAVKKLFFEHRNLFLSTPKEDGNAPKSLSPLDTARIIYKTLKVIKLDHQ CCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECC SGLLGVYNPELGIYETNENFFHRLIYWLEPSYSQARSKEVLFKLETLAEVKQQTTEAHLI CCEEEEECCCCCEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEE PVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDKELV ECCCCHHCCCHHCCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHH SLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAERFA HHHHHHHHCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPTLAVFNKLVIQSTNFL HHHHHCCEEEECCCCCCHHCCCCCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCC PKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKDVLEYVLKIALSLNFEKFDE CCCCCCCCCCEEEEEEEECCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCHHHCCC PKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISALYRAWCEDEGVKPFTKREF CCHHHHHHHHCEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH ENKLPDYVKDQWKKTVQRPNSAGFNRAVDLHRANEMELFRRLFYWDDEKHKKVTKGYSRK HHCCHHHHHHHHHHHHCCCCCCCCCCEEHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCC KK CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA