Click here to switch to the map view.

The map label for this gene is yabD

Identifier: 15671991

GI number: 15671991

Start: 13281

End: 15272

Strand: Direct

Name: yabD

Synonym: L13272

Alternate gene names: NA

Gene position: 13281-15272 (Clockwise)

Preceding gene: 15671990

Following gene: 15671992

Centisome position: 0.56

GC content: 29.17

Gene sequence:

>1992_bases
ATGAATAAGGTTATTAAGTTTGTTCTTCTTGTTCTATTTATTGTTATTTCAATATCTTCTGCCAATATAGTAAAAAATAA
TTTTGTAGATAAGCAAATTGAAAAAAATTATGATGTTCAAGATTTTACACAAATTTATCTTCCTTCATCCATTAGTAGCG
ACAAGAATTTAATTTCCCTTGTAGAAGGTGTGTCGGCTAAAACTGGGGCATCTTTTATTTTTAGGAGTACGTATGGTGGA
GTAAAGAACGATGGGAAAGGTCATGCGGATTTGCTTAAAATGGATAGTAAAGCGGTGTTTTACAAGACAAACTATCAAAC
ATCTGATAAAAAAACTTTTGTATCTCACGGTTTTAGCTGTCAATTATGGAGTGAGCCTCTTAAGAATATTACGACTGTAG
AACAGGAAAATAGTGATGTTTATATAAAAAATAAAAATATCCAAACTTCTCTCCAAGACTTTTTAATAGCTCTTAATCAA
AAATATGGGACTCATATTACTTCTAAAAAATTAACGACTCGTCCTAGTGATTTTTATCCTAATAATTATACTAGTTTCAT
TGGTTTAACTAATGATAATTTATCTTTATTTATAGGAATTTCGATAGTTTTCTTTGCTATCTTTTTATTTGTTTGGTTAG
TTGGAAATAATAAAAAAATTGCTACTTATCGTTTGAATGGCGTCAGCGCTCATAGGATAGGCTTGCGTTTATTTTTGAAA
GAATTTTTTATAGTGACATTGCTGGCTTATATATTTTCAAGTTTTTTAGTTTTCAGAGGATTTAATCTTCAATTTAGTTT
GCAAATGTTTATTATGCTGTTACTTGTTATCATAGTTTCCTATATCTCCATAGTACTTGTATCTAGCTTTTCACTTGCCA
ATCAGATTAACTCTAAGTCATTTTTTAAGTATAGTCACTATGTTCTCTATGCGGTCAAAGCATTTGTATTTTTGATTACA
GTTTCTACAACAGCAACTCTACTCTATTTTGTAAATGCTAAGCTAGAAATAACTTCCAAAATTGGGCAAGAATATGCCAT
ACTTTACCCAGAATTTTCAGGCTATGACGGAGGTCAGCCCCTAAATCTATCATGCATTGATTTATTTGTTTATGCTGAGG
AACATGATGGACTTTATATTTCTGATTCAAGCATTGATATTGTAGAAAATGATAGTCTGAATGACTTACAAATTAATGAT
AACTATCTTTCAAAATTTGCTATATACTCCCAGGACAATCAAAGAGTAGAAATAAATCCTGATACAAATTCGGGGATTAT
TTTGGTTTCGGAAAAATATAAATCTCAACTTTCTAAGATAAAAAAATATTATGCTTCTTCTGATTCATTGGCATTTTTTA
AAGGTTCAACTATAAAATACTATTTCATAAAAGATGCTCAAAAGTTAGACTTACTAGACGAAAATAGTACCAAAATATCT
CCAGATTTAGTAGAAGTTTATACGAGAAAAAATTTTACTGATAAGGGAAATGTTACTTTTCAACACAATACTGTTTTGAA
ATTTAAAATTAGGGGAACAATAGAAAAAACATATCAACCACTTATTCCTATTTTGAAGAAAAATAGTGCTCTTGAAACTC
ACCCTTCCATGATTAAGATAGACGATATAAGTAAAACGGATAATTTGAGTACGGTTGGAAATCCCTATAATTATGCTGTT
ACTAATGGTTTAGTGATTCTTATATTTTTATCAATGATTCTGACAACTACGGTTTTTTATTTTGAAACATACAAAAAGAA
AATTGCGGTCAAAAGATTATATGGAATTTCTTTCTTTGTAACTTATAAAACTCTTTTTGCAATAGTCTTAGTGCAGGGAA
GTTTATATTTTGCTTTTGCTTTAAGTCAAAGAGATGTTAACATCACACTGGAGGGACTGGGAATTTATTTTGTCTTAGAA
ATTTTGATTATTATTTTGATATTGCTAAAACTACAAAAAGGACTATTTTTGAATGTCTTGAAAGGAGAATAG

Upstream 100 bases:

>100_bases
TAATACCGTATCAGCTAACAAGATTGCACAGGCGAAAGCTATTGGGGCATGGAATGCTGGTTATAGTGGTTGGTTTGTCA
AATTATAATAGGGAGTTAAT

Downstream 100 bases:

>100_bases
AATGATTGAGATTGAAGAACTGACAAAAAGTTACAAAGGGCATATTATTTTTGATAAATTAAATTTAAGAATTCCGGAAG
GAAAAATGACCGCAATTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 663; Mature: 663

Protein sequence:

>663_residues
MNKVIKFVLLVLFIVISISSANIVKNNFVDKQIEKNYDVQDFTQIYLPSSISSDKNLISLVEGVSAKTGASFIFRSTYGG
VKNDGKGHADLLKMDSKAVFYKTNYQTSDKKTFVSHGFSCQLWSEPLKNITTVEQENSDVYIKNKNIQTSLQDFLIALNQ
KYGTHITSKKLTTRPSDFYPNNYTSFIGLTNDNLSLFIGISIVFFAIFLFVWLVGNNKKIATYRLNGVSAHRIGLRLFLK
EFFIVTLLAYIFSSFLVFRGFNLQFSLQMFIMLLLVIIVSYISIVLVSSFSLANQINSKSFFKYSHYVLYAVKAFVFLIT
VSTTATLLYFVNAKLEITSKIGQEYAILYPEFSGYDGGQPLNLSCIDLFVYAEEHDGLYISDSSIDIVENDSLNDLQIND
NYLSKFAIYSQDNQRVEINPDTNSGIILVSEKYKSQLSKIKKYYASSDSLAFFKGSTIKYYFIKDAQKLDLLDENSTKIS
PDLVEVYTRKNFTDKGNVTFQHNTVLKFKIRGTIEKTYQPLIPILKKNSALETHPSMIKIDDISKTDNLSTVGNPYNYAV
TNGLVILIFLSMILTTTVFYFETYKKKIAVKRLYGISFFVTYKTLFAIVLVQGSLYFAFALSQRDVNITLEGLGIYFVLE
ILIIILILLKLQKGLFLNVLKGE

Sequences:

>Translated_663_residues
MNKVIKFVLLVLFIVISISSANIVKNNFVDKQIEKNYDVQDFTQIYLPSSISSDKNLISLVEGVSAKTGASFIFRSTYGG
VKNDGKGHADLLKMDSKAVFYKTNYQTSDKKTFVSHGFSCQLWSEPLKNITTVEQENSDVYIKNKNIQTSLQDFLIALNQ
KYGTHITSKKLTTRPSDFYPNNYTSFIGLTNDNLSLFIGISIVFFAIFLFVWLVGNNKKIATYRLNGVSAHRIGLRLFLK
EFFIVTLLAYIFSSFLVFRGFNLQFSLQMFIMLLLVIIVSYISIVLVSSFSLANQINSKSFFKYSHYVLYAVKAFVFLIT
VSTTATLLYFVNAKLEITSKIGQEYAILYPEFSGYDGGQPLNLSCIDLFVYAEEHDGLYISDSSIDIVENDSLNDLQIND
NYLSKFAIYSQDNQRVEINPDTNSGIILVSEKYKSQLSKIKKYYASSDSLAFFKGSTIKYYFIKDAQKLDLLDENSTKIS
PDLVEVYTRKNFTDKGNVTFQHNTVLKFKIRGTIEKTYQPLIPILKKNSALETHPSMIKIDDISKTDNLSTVGNPYNYAV
TNGLVILIFLSMILTTTVFYFETYKKKIAVKRLYGISFFVTYKTLFAIVLVQGSLYFAFALSQRDVNITLEGLGIYFVLE
ILIIILILLKLQKGLFLNVLKGE
>Mature_663_residues
MNKVIKFVLLVLFIVISISSANIVKNNFVDKQIEKNYDVQDFTQIYLPSSISSDKNLISLVEGVSAKTGASFIFRSTYGG
VKNDGKGHADLLKMDSKAVFYKTNYQTSDKKTFVSHGFSCQLWSEPLKNITTVEQENSDVYIKNKNIQTSLQDFLIALNQ
KYGTHITSKKLTTRPSDFYPNNYTSFIGLTNDNLSLFIGISIVFFAIFLFVWLVGNNKKIATYRLNGVSAHRIGLRLFLK
EFFIVTLLAYIFSSFLVFRGFNLQFSLQMFIMLLLVIIVSYISIVLVSSFSLANQINSKSFFKYSHYVLYAVKAFVFLIT
VSTTATLLYFVNAKLEITSKIGQEYAILYPEFSGYDGGQPLNLSCIDLFVYAEEHDGLYISDSSIDIVENDSLNDLQIND
NYLSKFAIYSQDNQRVEINPDTNSGIILVSEKYKSQLSKIKKYYASSDSLAFFKGSTIKYYFIKDAQKLDLLDENSTKIS
PDLVEVYTRKNFTDKGNVTFQHNTVLKFKIRGTIEKTYQPLIPILKKNSALETHPSMIKIDDISKTDNLSTVGNPYNYAV
TNGLVILIFLSMILTTTVFYFETYKKKIAVKRLYGISFFVTYKTLFAIVLVQGSLYFAFALSQRDVNITLEGLGIYFVLE
ILIIILILLKLQKGLFLNVLKGE

Specific function: Unknown

COG id: COG4652

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 75341; Mature: 75341

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKVIKFVLLVLFIVISISSANIVKNNFVDKQIEKNYDVQDFTQIYLPSSISSDKNLISL
CHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHCCCCHHHHHHEEECCCCCCCHHHHHH
VEGVSAKTGASFIFRSTYGGVKNDGKGHADLLKMDSKAVFYKTNYQTSDKKTFVSHGFSC
HHCCCCCCCCCEEEEECCCCCCCCCCCCHHHEEECCCEEEEEECCCCCCCHHHHHCCCEE
QLWSEPLKNITTVEQENSDVYIKNKNIQTSLQDFLIALNQKYGTHITSKKLTTRPSDFYP
EEHHHHHHCCCEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCC
NNYTSFIGLTNDNLSLFIGISIVFFAIFLFVWLVGNNKKIATYRLNGVSAHRIGLRLFLK
CCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHH
EFFIVTLLAYIFSSFLVFRGFNLQFSLQMFIMLLLVIIVSYISIVLVSSFSLANQINSKS
HHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
FFKYSHYVLYAVKAFVFLITVSTTATLLYFVNAKLEITSKIGQEYAILYPEFSGYDGGQP
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECEEEEHHHCCCCEEEEEECCCCCCCCCC
LNLSCIDLFVYAEEHDGLYISDSSIDIVENDSLNDLQINDNYLSKFAIYSQDNQRVEINP
CCEEEEEEEEEEECCCCEEEECCCEEEEECCCCCEEEECCCHHHEEEEEECCCCEEEECC
DTNSGIILVSEKYKSQLSKIKKYYASSDSLAFFKGSTIKYYFIKDAQKLDLLDENSTKIS
CCCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCCEECCCCCCCCCCC
PDLVEVYTRKNFTDKGNVTFQHNTVLKFKIRGTIEKTYQPLIPILKKNSALETHPSMIKI
HHHHHHHHCCCCCCCCCEEEEECEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCEEEE
DDISKTDNLSTVGNPYNYAVTNGLVILIFLSMILTTTVFYFETYKKKIAVKRLYGISFFV
ECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYKTLFAIVLVQGSLYFAFALSQRDVNITLEGLGIYFVLEILIIILILLKLQKGLFLNVL
HHHHHHHHHHHCCCEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEE
KGE
CCC
>Mature Secondary Structure
MNKVIKFVLLVLFIVISISSANIVKNNFVDKQIEKNYDVQDFTQIYLPSSISSDKNLISL
CHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHCCCCHHHHHHEEECCCCCCCHHHHHH
VEGVSAKTGASFIFRSTYGGVKNDGKGHADLLKMDSKAVFYKTNYQTSDKKTFVSHGFSC
HHCCCCCCCCCEEEEECCCCCCCCCCCCHHHEEECCCEEEEEECCCCCCCHHHHHCCCEE
QLWSEPLKNITTVEQENSDVYIKNKNIQTSLQDFLIALNQKYGTHITSKKLTTRPSDFYP
EEHHHHHHCCCEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCC
NNYTSFIGLTNDNLSLFIGISIVFFAIFLFVWLVGNNKKIATYRLNGVSAHRIGLRLFLK
CCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHH
EFFIVTLLAYIFSSFLVFRGFNLQFSLQMFIMLLLVIIVSYISIVLVSSFSLANQINSKS
HHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
FFKYSHYVLYAVKAFVFLITVSTTATLLYFVNAKLEITSKIGQEYAILYPEFSGYDGGQP
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECEEEEHHHCCCCEEEEEECCCCCCCCCC
LNLSCIDLFVYAEEHDGLYISDSSIDIVENDSLNDLQINDNYLSKFAIYSQDNQRVEINP
CCEEEEEEEEEEECCCCEEEECCCEEEEECCCCCEEEECCCHHHEEEEEECCCCEEEECC
DTNSGIILVSEKYKSQLSKIKKYYASSDSLAFFKGSTIKYYFIKDAQKLDLLDENSTKIS
CCCCCEEEEEHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCCEECCCCCCCCCCC
PDLVEVYTRKNFTDKGNVTFQHNTVLKFKIRGTIEKTYQPLIPILKKNSALETHPSMIKI
HHHHHHHHCCCCCCCCCEEEEECEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCEEEE
DDISKTDNLSTVGNPYNYAVTNGLVILIFLSMILTTTVFYFETYKKKIAVKRLYGISFFV
ECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYKTLFAIVLVQGSLYFAFALSQRDVNITLEGLGIYFVLEILIIILILLKLQKGLFLNVL
HHHHHHHHHHHCCCEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEE
KGE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA