| Definition | Chlamydia muridarum Nigg, complete genome. |
|---|---|
| Accession | NC_002620 |
| Length | 1,072,950 |
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Identifier: 15835340
GI number: 15835340
Start: 861879
End: 863828
Strand: Direct
Name: Not Available
Synonym: TC0725
Alternate gene names: 15835340
Gene position: 861879-863828 (Clockwise)
Preceding gene: 15835339
Following gene: 15835344
Centisome position: 80.33
GC content: 39.54
Gene sequence:
>1950_bases ATGAAGAGACTCGCTCGTTTTTGTCTTCTAGCCTTAACTTTATTCCCACAACTTGCGTTTTCCTCAGCCCCCCTCCGACA ACAAGATGTCCGCAAAACCGTAGAAAAATTAGTCGAGCACCATATTGATACAAAACATATTTCTCCCCACATTTTATCGA GATCTTTGGAAGACTATGCTCGATCATTCGATTCTCATAAAGCATACTTAACCCAAGATGAGGTCCTAACATACGTCTTT TCAGAAAAAGCGACCCATTCCTTATTTAAACAATACCAAGAAGATAATTTCGCTTCTTTTAGAGAGTTACATACTTGTAT TCAACAGAGCATTTCCCGGGTAAGAGAGTGGCGTACTGTGTGGTTATCAGATGCTGTTCGCGTCATTCAAGATGCTTCCT CACATACTATCCCAAAAAAACCAACTACCTGGGGATCTTCTATTGAAGAGGTAAAGCAAAGACAATATGAGCTTCTTCTT TCCTATGCATCTATCTACCTAGAAGATGCTACAAAAAATCGCTATCAGGGGAAAGAACATGCACTAGTGAGATTATGTAT TCGCCAGATTGAAAATCACGAAAATCCTTATATAGGAATCAATGACCATGGACTCAAAATGTCTCTTGAAGAAGAGGCCA ATAGCTTCCATATTCGCATCATTAAATCCATTGCTCATAGTTTAGATGCTCATACAGCCTACTTCAGCAAAGAAGAAGCC CTTTCTATGCGAGCTCAGCTGGAGAAAGGTATGTGTGGAATAGGGGTAGTTCTGAAAGAAGACATTGATGGTGTAGTTGT TAAAGAAGTTCTTCCTGGAGGGCCTGCTGATAAAACAGGAAGTCTTCGTGTGGGCGATATTATTTACCGCGTTAATGGGA AAAATATTGAAAACACCCCTTTTCCTGGAGTTTTAGATTCCCTAAGAGGATTACCAGGATCTTCCGTCACTTTAGATATT CACAGACAAAACAACGACCATGTCGTTCAACTACGCCGAGAAAAAATTCTCTTAGATAGCCGCCGTGTTGATGTATCCTA TGAACCTTACGGTGACGGCATTATCGGGAAAATCACCCTACACTCCTTTTATGAAGGAGAAAATCAGATATCTAGTGAAC AGGATTTACGACGAGCTATTCGAGAACTGCAAGAAAAAAACCTTCTTGGGTTAGTTCTTGATATTCGAGAAAACACCGGA GGATTTTTATCTCAAGCCATCAAAGTTTCTGGTTTGTTCCTAACCAATGGAGTTGTTGTTGTCTCTCGATATGCGGATGG ATCTGTAAAACGCTATCGCACGATTTCTCCTCAAAAATTTTATGATGGGCCATTAGCTGTTTTGGTTTCTAAAAGCTCTG CTTCCGCAGCAGAAATTGTTGCACAAACACTTCAAGACTATGGTGTAGCCCTTATTGTCGGAGATAAACAAACCTATGGG AAAGGAACCATACAACACCAAACGATTACAGGGAACAACTCTCAAGAAGATTTCTTTAAAGTAACTGTAGGGAGATACTA TTCTCCTTCAGGGAAATCCACACAACTGGAAGGTGTTAAATCAGATATTGTTATCCCCTCCCGATATGCGGAAGACAATC TAGGTGAACGTTTTTTAGAATATGCTCTCCCAGCCGATCAATATGAGAATGTTTTGAACGACAATTTAGGAGATCTCGAT ATCCATATTCGTCCCTGGTTCCAAAAATACTATTCTCCACATTTACAAAAAACCGAGCTTACGTGGAGAGAAATGCTTCC CCAACTCGTCGAGAACAGTCAGCAGCGTCTTGAAAAAAACAAAAATTTTGAAATTTTTGTTCAACATTTGAAAAAAACAG ATAAACAAGAACAATCATTTGGAAGCAATGACCTGCAAATGGAAGAGACTGTCAATATTGTTAAAGACATGATTCTTTTG CAAACTTCATTAAGATCTCCCGCACAATAA
Upstream 100 bases:
>100_bases AACAACCAGGGACTTGAGGGTTCATAAGACAAAAGCCGACTCAAGTTTGAAAAACTCGTGTCGAAGATACGAATAATCAC TATTAATAGAGATATTCGTA
Downstream 100 bases:
>100_bases ATCAGGGGAGGGGGTGGGTTACCCCTCCCCCCCCCTTTTTTTATGCTGTTTAGAAACACATTGAATTTCGGTCTTTGCAT TTCTAAACAATTTTTTAGCT
Product: tail specific protease precursor, putative
Products: NA
Alternate protein names: C-terminal-processing peptidase; PRC protein; Protease Re [H]
Number of amino acids: Translated: 649; Mature: 649
Protein sequence:
>649_residues MKRLARFCLLALTLFPQLAFSSAPLRQQDVRKTVEKLVEHHIDTKHISPHILSRSLEDYARSFDSHKAYLTQDEVLTYVF SEKATHSLFKQYQEDNFASFRELHTCIQQSISRVREWRTVWLSDAVRVIQDASSHTIPKKPTTWGSSIEEVKQRQYELLL SYASIYLEDATKNRYQGKEHALVRLCIRQIENHENPYIGINDHGLKMSLEEEANSFHIRIIKSIAHSLDAHTAYFSKEEA LSMRAQLEKGMCGIGVVLKEDIDGVVVKEVLPGGPADKTGSLRVGDIIYRVNGKNIENTPFPGVLDSLRGLPGSSVTLDI HRQNNDHVVQLRREKILLDSRRVDVSYEPYGDGIIGKITLHSFYEGENQISSEQDLRRAIRELQEKNLLGLVLDIRENTG GFLSQAIKVSGLFLTNGVVVVSRYADGSVKRYRTISPQKFYDGPLAVLVSKSSASAAEIVAQTLQDYGVALIVGDKQTYG KGTIQHQTITGNNSQEDFFKVTVGRYYSPSGKSTQLEGVKSDIVIPSRYAEDNLGERFLEYALPADQYENVLNDNLGDLD IHIRPWFQKYYSPHLQKTELTWREMLPQLVENSQQRLEKNKNFEIFVQHLKKTDKQEQSFGSNDLQMEETVNIVKDMILL QTSLRSPAQ
Sequences:
>Translated_649_residues MKRLARFCLLALTLFPQLAFSSAPLRQQDVRKTVEKLVEHHIDTKHISPHILSRSLEDYARSFDSHKAYLTQDEVLTYVF SEKATHSLFKQYQEDNFASFRELHTCIQQSISRVREWRTVWLSDAVRVIQDASSHTIPKKPTTWGSSIEEVKQRQYELLL SYASIYLEDATKNRYQGKEHALVRLCIRQIENHENPYIGINDHGLKMSLEEEANSFHIRIIKSIAHSLDAHTAYFSKEEA LSMRAQLEKGMCGIGVVLKEDIDGVVVKEVLPGGPADKTGSLRVGDIIYRVNGKNIENTPFPGVLDSLRGLPGSSVTLDI HRQNNDHVVQLRREKILLDSRRVDVSYEPYGDGIIGKITLHSFYEGENQISSEQDLRRAIRELQEKNLLGLVLDIRENTG GFLSQAIKVSGLFLTNGVVVVSRYADGSVKRYRTISPQKFYDGPLAVLVSKSSASAAEIVAQTLQDYGVALIVGDKQTYG KGTIQHQTITGNNSQEDFFKVTVGRYYSPSGKSTQLEGVKSDIVIPSRYAEDNLGERFLEYALPADQYENVLNDNLGDLD IHIRPWFQKYYSPHLQKTELTWREMLPQLVENSQQRLEKNKNFEIFVQHLKKTDKQEQSFGSNDLQMEETVNIVKDMILL QTSLRSPAQ >Mature_649_residues MKRLARFCLLALTLFPQLAFSSAPLRQQDVRKTVEKLVEHHIDTKHISPHILSRSLEDYARSFDSHKAYLTQDEVLTYVF SEKATHSLFKQYQEDNFASFRELHTCIQQSISRVREWRTVWLSDAVRVIQDASSHTIPKKPTTWGSSIEEVKQRQYELLL SYASIYLEDATKNRYQGKEHALVRLCIRQIENHENPYIGINDHGLKMSLEEEANSFHIRIIKSIAHSLDAHTAYFSKEEA LSMRAQLEKGMCGIGVVLKEDIDGVVVKEVLPGGPADKTGSLRVGDIIYRVNGKNIENTPFPGVLDSLRGLPGSSVTLDI HRQNNDHVVQLRREKILLDSRRVDVSYEPYGDGIIGKITLHSFYEGENQISSEQDLRRAIRELQEKNLLGLVLDIRENTG GFLSQAIKVSGLFLTNGVVVVSRYADGSVKRYRTISPQKFYDGPLAVLVSKSSASAAEIVAQTLQDYGVALIVGDKQTYG KGTIQHQTITGNNSQEDFFKVTVGRYYSPSGKSTQLEGVKSDIVIPSRYAEDNLGERFLEYALPADQYENVLNDNLGDLD IHIRPWFQKYYSPHLQKTELTWREMLPQLVENSQQRLEKNKNFEIFVQHLKKTDKQEQSFGSNDLQMEETVNIVKDMILL QTSLRSPAQ
Specific function: Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 (PBP3). May be involved in protection of the bacterium from thermal and osmotic stresses [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=471, Percent_Identity=30.1486199575372, Blast_Score=182, Evalue=6e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 - InterPro: IPR020992 [H]
Pfam domain/function: PF11818 DUF3340; PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 73864; Mature: 73864
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLARFCLLALTLFPQLAFSSAPLRQQDVRKTVEKLVEHHIDTKHISPHILSRSLEDYA CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH RSFDSHKAYLTQDEVLTYVFSEKATHSLFKQYQEDNFASFRELHTCIQQSISRVREWRTV HHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH WLSDAVRVIQDASSHTIPKKPTTWGSSIEEVKQRQYELLLSYASIYLEDATKNRYQGKEH HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH ALVRLCIRQIENHENPYIGINDHGLKMSLEEEANSFHIRIIKSIAHSLDAHTAYFSKEEA HHHHHHHHHHHCCCCCEEEECCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHH LSMRAQLEKGMCGIGVVLKEDIDGVVVKEVLPGGPADKTGSLRVGDIIYRVNGKNIENTP HHHHHHHHCCCCCCCEEEECCCCCEEHHHHCCCCCCCCCCCEEECEEEEEECCCCCCCCC FPGVLDSLRGLPGSSVTLDIHRQNNDHVVQLRREKILLDSRRVDVSYEPYGDGIIGKITL CCHHHHHHCCCCCCCEEEEEEECCCCCEEHHHHHHHHCCCCCEEEEECCCCCCCEEEEEE HSFYEGENQISSEQDLRRAIRELQEKNLLGLVLDIRENTGGFLSQAIKVSGLFLTNGVVV HHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCEEEECCEEE VSRYADGSVKRYRTISPQKFYDGPLAVLVSKSSASAAEIVAQTLQDYGVALIVGDKQTYG EEECCCCCCHHHCCCCCCHHCCCCEEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCC KGTIQHQTITGNNSQEDFFKVTVGRYYSPSGKSTQLEGVKSDIVIPSRYAEDNLGERFLE CCCEEEEEECCCCCCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH YALPADQYENVLNDNLGDLDIHIRPWFQKYYSPHLQKTELTWREMLPQLVENSQQRLEKN HCCCHHHHHHHHCCCCCCEEEEEEHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHC KNFEIFVQHLKKTDKQEQSFGSNDLQMEETVNIVKDMILLQTSLRSPAQ CCHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKRLARFCLLALTLFPQLAFSSAPLRQQDVRKTVEKLVEHHIDTKHISPHILSRSLEDYA CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH RSFDSHKAYLTQDEVLTYVFSEKATHSLFKQYQEDNFASFRELHTCIQQSISRVREWRTV HHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH WLSDAVRVIQDASSHTIPKKPTTWGSSIEEVKQRQYELLLSYASIYLEDATKNRYQGKEH HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH ALVRLCIRQIENHENPYIGINDHGLKMSLEEEANSFHIRIIKSIAHSLDAHTAYFSKEEA HHHHHHHHHHHCCCCCEEEECCCCCEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHH LSMRAQLEKGMCGIGVVLKEDIDGVVVKEVLPGGPADKTGSLRVGDIIYRVNGKNIENTP HHHHHHHHCCCCCCCEEEECCCCCEEHHHHCCCCCCCCCCCEEECEEEEEECCCCCCCCC FPGVLDSLRGLPGSSVTLDIHRQNNDHVVQLRREKILLDSRRVDVSYEPYGDGIIGKITL CCHHHHHHCCCCCCCEEEEEEECCCCCEEHHHHHHHHCCCCCEEEEECCCCCCCEEEEEE HSFYEGENQISSEQDLRRAIRELQEKNLLGLVLDIRENTGGFLSQAIKVSGLFLTNGVVV HHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCEEEECCEEE VSRYADGSVKRYRTISPQKFYDGPLAVLVSKSSASAAEIVAQTLQDYGVALIVGDKQTYG EEECCCCCCHHHCCCCCCHHCCCCEEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCC KGTIQHQTITGNNSQEDFFKVTVGRYYSPSGKSTQLEGVKSDIVIPSRYAEDNLGERFLE CCCEEEEEECCCCCCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH YALPADQYENVLNDNLGDLDIHIRPWFQKYYSPHLQKTELTWREMLPQLVENSQQRLEKN HCCCHHHHHHHHCCCCCCEEEEEEHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHC KNFEIFVQHLKKTDKQEQSFGSNDLQMEETVNIVKDMILLQTSLRSPAQ CCHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1856173; 1729701; 9097040; 9278503; 1447154; 10049386; 7499412; 8576225 [H]