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Identifier: 15835320

GI number: 15835320

Start: 844098

End: 844583

Strand: Direct

Name: Not Available

Synonym: TC0705

Alternate gene names: NA

Gene position: 844098-844583 (Clockwise)

Preceding gene: 15835319

Following gene: 15835321

Centisome position: 78.67

GC content: 40.53

Gene sequence:

>486_bases
TTGCTTATTTTGGATCGATCTTCTCCTCAAATTTTTATTTCCAATGAACAACAGGACGTTGATATAGATTTACAATCTGT
TCAGCGTCTTGTTATTTTGTTTTTGGAACTGCAAAAAGTCTCTACAGATCAGGTATACATTTATTTTTTGAGCGATGCCG
CTCTTGCTCAGTTACACGATGAGCAATTTTCTGATCCCTCTCTCACAGACACTATCACTCTTCCGATAGATAGACCTGGC
ATCCAATCTTTCCCTCACGTCTTAGGAGAAGCTTTCGTTAGCCCTAGAGCGGCTATGCGATTCTTAGGGCAATACACAGA
AGCCCAACTATACCATGAAATCTCCCGTTATGTAGTCCATTCCTTGCTACACATGCTAGGATACGATGATCAAACAGATG
AAGATAAGCGTATTATGCGAGAACAAGAAGATTCTTCCCTAACCTTCTTAGCTCAGAACCAAGCACTGTTGCATCCTACT
GTATAA

Upstream 100 bases:

>100_bases
GCGCATTGAAGTGTTACGTAAATTAGGACGCTGGGATGACGCTACTGCTAAAAAAGCCACAGGACTTCTGAAGACTCCTG
TAATTAAATAGTTCATATTT

Downstream 100 bases:

>100_bases
AAAGTCTTCCACTTTCTCTAGAAATCTCTATATCGATAAAAATTTTTATCATAACATGTGAAGAGGCTATAAGTTCTTTC
TTGAATATAGTCCTGAAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MLILDRSSPQIFISNEQQDVDIDLQSVQRLVILFLELQKVSTDQVYIYFLSDAALAQLHDEQFSDPSLTDTITLPIDRPG
IQSFPHVLGEAFVSPRAAMRFLGQYTEAQLYHEISRYVVHSLLHMLGYDDQTDEDKRIMREQEDSSLTFLAQNQALLHPT
V

Sequences:

>Translated_161_residues
MLILDRSSPQIFISNEQQDVDIDLQSVQRLVILFLELQKVSTDQVYIYFLSDAALAQLHDEQFSDPSLTDTITLPIDRPG
IQSFPHVLGEAFVSPRAAMRFLGQYTEAQLYHEISRYVVHSLLHMLGYDDQTDEDKRIMREQEDSSLTFLAQNQALLHPT
V
>Mature_161_residues
MLILDRSSPQIFISNEQQDVDIDLQSVQRLVILFLELQKVSTDQVYIYFLSDAALAQLHDEQFSDPSLTDTITLPIDRPG
IQSFPHVLGEAFVSPRAAMRFLGQYTEAQLYHEISRYVVHSLLHMLGYDDQTDEDKRIMREQEDSSLTFLAQNQALLHPT
V

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_CHLMU (Q9PJX1)

Other databases:

- EMBL:   AE002160
- PIR:   B81674
- RefSeq:   NP_297079.1
- ProteinModelPortal:   Q9PJX1
- SMR:   Q9PJX1
- GeneID:   1246068
- GenomeReviews:   AE002160_GR
- KEGG:   cmu:TC0705
- TIGR:   TC_0705
- HOGENOM:   HBG402669
- OMA:   YEEISRY
- ProtClustDB:   CLSK2391191
- BioCyc:   CMUR243161:TC_0705-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18496; Mature: 18496

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILDRSSPQIFISNEQQDVDIDLQSVQRLVILFLELQKVSTDQVYIYFLSDAALAQLHD
CEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHH
EQFSDPSLTDTITLPIDRPGIQSFPHVLGEAFVSPRAAMRFLGQYTEAQLYHEISRYVVH
HCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLHMLGYDDQTDEDKRIMREQEDSSLTFLAQNQALLHPTV
HHHHHHCCCCCCCHHHHHHHHCCCCCEEEEECCCEECCCCC
>Mature Secondary Structure
MLILDRSSPQIFISNEQQDVDIDLQSVQRLVILFLELQKVSTDQVYIYFLSDAALAQLHD
CEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHH
EQFSDPSLTDTITLPIDRPGIQSFPHVLGEAFVSPRAAMRFLGQYTEAQLYHEISRYVVH
HCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLHMLGYDDQTDEDKRIMREQEDSSLTFLAQNQALLHPTV
HHHHHHCCCCCCCHHHHHHHHCCCCCEEEEECCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10684935